FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.132e-24
Identity = 73/179 (40.78%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            IHN+A+QGRFA   F    LP Q  S    +DG          N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P  D+++  +Y   T +  K   K AL  E+GL P     P++GFIGRL  QKG D+L   +P  ++ +V +I+LG G
Sbjct:  169 IHNLAFQGRFASRLFETSGLPPQAWS----VDGAEF---WGDFNLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRY-TPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLMESDVGVIILGEG 338          

HSP 2 Score: 23.8682 bits (50), Expect = 3.132e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V  A+DW T+L+P +L
Sbjct:  135 VLHAHDWQTALVPAFL 150          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPE (Glycogen synthase OS=Clostridium perfringens GN=glgA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 79/211 (37.44%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAF----EDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            TG++P   V  KL  S     K  K    IHN+ +QG F+     E FG    P +   S +F  G         +++MK  I  SD +LTVS  YA+E+ +    G  LD ++R+ G  +KGIVNG+D  E+NP  D  I   +   T+ D K L K ALQ E+GLP++ +IP+I  + RL  QKG D++       ++ NVQ+++LGTG
Sbjct:  142 TGMIP---VLHKLEYSKDPFYKNIKTVTSIHNLLFQGNFSADVLPELFGYDYEPVR-NGSLEFYGG---------MSFMKGAINYSDRILTVSETYAKEIKTPYF-GENLDGLLRERGYALKGIVNGIDYDEFNPSKDSLIAKNFSVKTIED-KVLNKLALQKELGLPINPDIPMISIVSRLTNQKGCDLIVNIANRLLQRNVQLVILGTG 337          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.305e-24
Identity = 71/190 (37.37%), Postives = 105/190 (55.26%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK----INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            P     IHN+AYQG+FA E  G + LP    SSFD        V G +    I+++KAG+  +D + TVSP YA+E+ S E  G+ L  ++R     + GI+NG+D+  WNP TD +I  ++ A   +  +   K  LQ +  L      P++G I RL  QKG D+L  AIP  + E +Q+ +LG+G +
Sbjct:  159 PGTVMTIHNMAYQGKFAPELIGAIGLPW---SSFD--------VNGLEYFGGISFLKAGLQFADRITTVSPTYAREIQSDEG-GMGLGGLLRARAGALSGILNGIDIAVWNPQTDSHIAYRFGAED-LTFRAANKAVLQQQFNLDSSDEAPLLGVISRLSWQKGLDLLLEAIPTILGEGMQLALLGSGDR 335          

HSP 2 Score: 22.3274 bits (46), Expect = 5.305e-24
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPK 105
            A+DW   L P YL    +P+
Sbjct:  139 AHDWQAGLAPAYLHYDNRPR 158          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACLD (Glycogen synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.904e-24
Identity = 71/198 (35.86%), Postives = 110/198 (55.56%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPH-FIKENVQIIVLGTGKKPWRSSLNSWRY 706
            K  F IHN+ +QG F  E    LL L     ++ + ++ Y        IN+MK GI+ +D V TVSP Y  E+++    G  L+ ++  +K  + GI+NG+D   ++PL D +I   YDA    D K   K  +Q   GLPV+ +IP+I  + RL +QKG D++   +   F +E++Q+IVLGTG+  +    N +RY
Sbjct:  157 KSVFTIHNLQFQGIFPKEAVHDLLGLDISHFTT-EKLEFYGN------INYMKGGIIAADQVTTVSPTYRDEILTPY-YGERLEGVLSDKKDALTGILNGIDDVLYDPLNDPHIDYHYDAVN-RDGKRKNKAVIQKTFGLPVNEDIPLISMVARLTKQKGFDLIKRVLHELFEEEDMQLIVLGTGEAEFE---NYFRY 342          

HSP 2 Score: 30.8018 bits (68), Expect = 6.904e-24
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V   +DWHT ++   LK  Y+ K  Y+  K VF
Sbjct:  128 VIHTHDWHTGMVNYLLKEEYRKKPFYQHMKSVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRMU (Glycogen synthase OS=Streptococcus mutans GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.905e-24
Identity = 66/186 (35.48%), Postives = 102/186 (54.84%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK---INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  F IHNI +QG+F          P+     F   D   +    R    +NWMKA +L +D V TVSP YA+E+++ E  G  LD I+R     + G+VNG+D   ++P TD ++ V +     +  K   K ALQ  VGLPV  ++P++G + RL +QKG  ++   +   ++ ++QI++LGTG
Sbjct:  157 KTVFTIHNIEFQGQFN---------PSMLGELFGVGDERYRDGTLRWNDCLNWMKAAVLYADRVTTVSPSYAKEIMTPEF-GKGLDQIMRMESGKLSGVVNGIDTDLFDPETDPHLAVHFSKDD-LSGKAKNKAALQERVGLPVREDVPLVGIVSRLTDQKGFQLVVDQLNTMMQLDLQIVLLGTG 331          

HSP 2 Score: 27.335 bits (59), Expect = 6.905e-24
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            D++ V +D+HT++IP  LK  Y     Y   K VF
Sbjct:  127 DILHV-HDYHTAMIPYLLKEKYHWINAYHGIKTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FINM2 (Glycogen synthase OS=Finegoldia magna (strain ATCC 29328) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.906e-24
Identity = 69/186 (37.10%), Postives = 97/186 (52.15%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTG 667
            K  F IHN+ YQG F+       +L   +  + +  F D          IN+MK  I+ SD V TVS  YA E +     G  LD +IR+   K  GI NG+D   WNP TDKY+   Y    + D K   K+ALQ   GL  ++N+PV   + RL E KG +++   +  F+  E+VQ+++LGTG
Sbjct:  157 KTVFTIHNLKYQGVFSSNSLRQTDLSPMYFTEDALKFYDA---------INFMKGAIVFSDRVTTVSKTYADE-IKYSFFGEGLDGVIRQYHYKISGITNGIDTTIWNPETDKYLFKNYSLKNIKD-KDENKKALQRMYGLE-EKNVPVFAMVTRLVENKGLELVRYIMDEFLTTEDVQVVILGTG 330          

HSP 2 Score: 31.9574 bits (71), Expect = 6.906e-24
Identity = 12/30 (40.00%), Postives = 18/30 (60.00%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            +NDWHT+++  Y +   K    Y+S K VF
Sbjct:  131 SNDWHTAMVNVYARDFAKGDPFYESIKTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 67/185 (36.22%), Postives = 107/185 (57.84%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            K  F IHN+ +QG F  E  G LLNL  ++  S + ++ Y        +++MK  ++ + ++ TVSP Y +E+ +    G  LD ++R   + + GI+NG+D + +NP  D YI V YD +T+   K + K ALQ    LP + ++PVI  + RL +QKG D++       I E+VQ+I+LGTG+
Sbjct:  157 KTVFTIHNLQFQGIFPREILGDLLNLSDRY-FSIEHLEFYGH------VSFMKGALVSAHLITTVSPTYKEEIQTPY-YGERLDGLLRARSSHLVGILNGIDDEIYNPKKDPYIAVPYDVTTIA-RKSINKRALQQHFSLPSEEDVPVIAIVSRLTKQKGLDLVKCVFHEIIAEHVQMIILGTGE 332          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_MAGSA (Glycogen synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.979e-24
Identity = 66/191 (34.55%), Postives = 105/191 (54.97%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKS--SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA--KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP 676
            P   F IHNIAYQG+F  +    L  P +  +   F++ D          ++++K+G+  SD + TVSP YA+E+ +    G  ++ ++  R   + GI+NG D + WNP  D ++     A T  DA  K   K ALQAE+GL    + P++  + RL + KG D++ AA+P+ +K   Q+ V+GTG +P
Sbjct:  162 PATVFTIHNIAYQGQFPRDLVPRLGFPPEMYAMDGFEYYD---------TLSFLKSGLFYSDRITTVSPRYAKEIQTPAF-GCGMEGLLAHRAADLTGILNGADYEVWNPAADTHLD---HAFTPGDAAGKACNKAALQAELGLSQAPDAPLMVIVSRLNDHKGMDLVLAALPNILKMGAQVAVVGTGDRP 339          

HSP 2 Score: 25.409 bits (54), Expect = 8.979e-24
Identity = 10/16 (62.50%), Postives = 10/16 (62.50%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V  ANDW T L P YL
Sbjct:  138 VLHANDWQTGLAPAYL 153          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPB (Glycogen synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 64/181 (35.36%), Postives = 105/181 (58.01%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  ++R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALVRQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOMG (Glycogen synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.520e-23
Identity = 66/182 (36.26%), Postives = 104/182 (57.14%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            +HN+ +QG F +E  GL+++       F F+   N      + N +K G+  + ++ TVS  YA+E+ + E  G  LD ++R+    + GI+NG+D ++WNP  D YI  +Y A+  +  K L K  LQ   GLP   ++P+ G + RL +QKG DILA AI   +  +VQ ++LG G +PW
Sbjct:  173 VHNMQHQGNF-YE--GLMDVLGIGWEHFTFLGLENNG----EANLLKGGLYHATVLNTVSEGYAREMQTPE-YGWGLDGVVRERAADLYGILNGVDYEDWNPEVDPYIAARYSAAD-LSGKKLCKRDLQRTFGLPERDDVPLFGMVSRLVKQKGVDILAEAIHRILALDVQFVMLGAG-EPW 344          

HSP 2 Score: 26.1794 bits (56), Expect = 1.520e-23
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMY 96
            A+DWHT+ IP  + T Y
Sbjct:  142 AHDWHTAAIPVLVNTTY 158          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_DESVH3.132e-2440.78Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_CLOPE4.003e-2437.44Glycogen synthase OS=Clostridium perfringens GN=gl... [more]
GLGA2_BRAJA5.305e-2437.37Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]
GLGA_BACLD6.904e-2435.86Glycogen synthase OS=Bacillus licheniformis (strai... [more]
GLGA_STRMU6.905e-2435.48Glycogen synthase OS=Streptococcus mutans GN=glgA ... [more]
GLGA_FINM26.906e-2437.10Glycogen synthase OS=Finegoldia magna (strain ATCC... [more]
GLGA_ANOFW8.918e-2436.22Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_MAGSA8.979e-2434.55Glycogen synthase OS=Magnetospirillum magneticum (... [more]
GLGA_YERPB1.165e-2335.36Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA1_GEOMG1.520e-2336.26Glycogen synthase 1 OS=Geobacter metallireducens (... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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