FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.575e-23
Identity = 66/184 (35.87%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P   F +HN+A+QG+F  E    L LP     S D ++ Y        I +MK+G+  SD + TVSP YA E + G   G+ LD ++R+    + GI+NG+D + WNP TDK I   YD   +  A+    ++++    L +D +  ++G I RL  QKG D+L  A+P  + E +Q+ +LG G
Sbjct:  159 PATVFTVHNLAFQGQFPRELLATLGLPPG-AFSVDGVEYYGS------IGYMKSGLQLSDRITTVSPAYALE-IQGPQAGMGLDGLLRQRAAQLTGILNGIDDKVWNPATDKRITATYDLDHLA-ARRANTQSVRELFDLSLDPDRLLLGVISRLSWQKGLDLLLEALPVLLAEGIQLALLGAG 333          

HSP 2 Score: 24.6386 bits (52), Expect = 2.575e-23
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPK 105
            A+DW   L P YL+   KP+
Sbjct:  139 AHDWQAGLTPAYLRYSGKPQ 158          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLP8 (Glycogen synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glgA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.575e-23
Identity = 62/196 (31.63%), Postives = 99/196 (50.51%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFD--FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            K  K+   +HN+  QG F          P  F+   D    DG  +   G  IN +  GI  +D+V T SP YA+++ S  +    +D  ++  K    GI+NGMD ++WNP +DK I  +Y A+   + K   K+ L  EVGLP     PV+G I   ++ +G  +L  ++   ++ ++Q+IV G+G K +   L
Sbjct:  170 KKVKIVQSVHNVYRQGVFQ---------PKMFQKHLDPEVFDGLER--EGDDINLLATGIKYADLVTTTSPSYAKQIASDPESSFGMDKALKACKDRFHGILNGMDTRQWNPSSDKLIKKRYSAAQP-ELKLEDKKVLLEEVGLPFSEETPVVGVITTFDDVQGMGLLKESLSKLLELDLQLIVSGSGNKEFEQEL 353          

HSP 2 Score: 31.9574 bits (71), Expect = 2.575e-23
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            NDWH  L+P   +T Y     +K  K+V
Sbjct:  148 NDWHAGLVPLLARTRYAKHDFFKKVKIV 175          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ALISL (Glycogen synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.575e-23
Identity = 61/179 (34.08%), Postives = 101/179 (56.42%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG-EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV--MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            +HN  ++G F ++D G L+   +FK+ +         V    I+ +KAG+  +D +  VSP YA+EL++     G+  D   R+  + GI+NG D  EW+P TD +I  ++ A+ +  +  K + K ALQ EVGLP  + + + G + RL  QKG   L   +  F+K ++QI+++GTG
Sbjct:  169 VHNAVFKGIFHYDDIGCLS---EFKTHYV----PEAAVSHTHISMLKAGVQCADKINAVSPTYAKELLTELGSHGMASDFQAREPDLFGILNGCDYSEWSPETDTFIPKQFKANRISMVRGKKVCKAALQEEVGLP-QKEVAMYGMVCRLTNQKGIHYLLPILEQFLKHDLQIVIVGTG 339          

HSP 2 Score: 30.4166 bits (67), Expect = 2.575e-23
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            V  ANDWHT L+P  LK  Y     +   + V
Sbjct:  135 VIHANDWHTGLLPYLLKKRYANDAYFSQVRSV 166          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.351e-23
Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQEL---VSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN 694
            P   F IHN+ Y+G F  E   L+ LP   +S F  I+G      G  ++ +KAGI+ +  V TVSP YA E+   V G+  G+E     R   + GI+NG+D   WNP TD Y+    D +     K + K+ L+  +GL  D + P+ G + R   QKG D++ AA+P  I    Q+ +LG G     ++LN
Sbjct:  160 PPFLFSIHNMEYRGLFGPEILDLIGLP---RSQFS-INGLE--FHGL-VSTLKAGIVYAQAVATVSPSYAAEIKTPVGGQ--GLEGLLQARAGDLSGILNGIDSNAWNPQTDPYLAAPIDGADPAPGKRINKDMLKRRMGLDADGDRPLFGLVSRFVAQKGIDLVVAALPGMIAGGAQVAILGAGDTGLEAALN 344          

HSP 2 Score: 23.483 bits (49), Expect = 3.351e-23
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V   +DW T L+P YL
Sbjct:  137 VLHGHDWQTGLVPAYL 152          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_GEOTN (Glycogen synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.351e-23
Identity = 64/188 (34.04%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  134 FCIHNIAYQGRFA---FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWR 682
            F IHN+ +QG F     ED  LLNL  ++  + D ++ Y        +++MK  ++ SD++ TVSP Y +E+ +    G  LD ++R  +  + GI+NG+D + +NP  D ++   Y   T  + K L K ALQ + GLP   ++P+I  + R+  QKG D++       + E++Q++VLGTG   WR
Sbjct:  160 FTIHNLQFQGLFPRGILED--LLNLDGRY-FTVDHLEFYGC------VSFMKGALVASDLITTVSPTYKEEIQTAY-YGERLDGLLRARRDDLLGILNGIDDEFYNPEADPFLTATYSVHT-RERKQLNKRALQRQFGLPEWDDVPLIAMVTRMTAQKGLDLVTCVFHEMMSEDMQLVVLGTG--DWR 334          

HSP 2 Score: 30.0314 bits (66), Expect = 3.351e-23
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V   +DWHT ++P  L+  Y+ +  Y   + VF
Sbjct:  128 VIHCHDWHTGMVPFLLREQYRHELFYVDMRTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACST (Glycogen synthase OS=Bacillus stearothermophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.351e-23
Identity = 64/188 (34.04%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  134 FCIHNIAYQGRFA---FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWR 682
            F IHN+ +QG F     ED  LLNL  ++  + D ++ Y        +++MK  ++ SD++ TVSP Y +E+ +    G  LD ++R  +  + GI+NG+D + +NP  D ++   Y   T  + K L K ALQ + GLP   ++P+I  + R+  QKG D++       + E++Q++VLGTG   WR
Sbjct:  160 FTIHNLQFQGLFPRGILED--LLNLDGRY-FTVDHLEFYGC------VSFMKGALVASDLITTVSPTYKEEIQTAY-YGERLDGLLRARRDDLLGILNGIDDEFYNPEADPFLTATYSVHT-RERKQLNKRALQRQFGLPEWDDVPLIAMVTRMTAQKGLDLVTCVFHEMMSEDMQLVVLGTG--DWR 334          

HSP 2 Score: 30.0314 bits (66), Expect = 3.351e-23
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V   +DWHT ++P  L+  Y+ +  Y   + VF
Sbjct:  128 VIHCHDWHTGMVPFLLREQYRHELFYVDMRTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPY (Glycogen synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPS (Glycogen synthase OS=Yersinia pseudotuberculosis GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPP (Glycogen synthase OS=Yersinia pestis (strain Pestoides F) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPN (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_RHOPB2.575e-2335.87Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_CHLP82.575e-2331.63Glycogen synthase OS=Chlorobaculum parvum (strain ... [more]
GLGA_ALISL2.575e-2334.08Glycogen synthase OS=Aliivibrio salmonicida (strai... [more]
GLGA_RHORT3.351e-2335.57Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA_GEOTN3.351e-2334.04Glycogen synthase OS=Geobacillus thermodenitrifica... [more]
GLGA_BACST3.351e-2334.04Glycogen synthase OS=Bacillus stearothermophilus G... [more]
GLGA_YERPY3.389e-2335.36Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_YERPS3.389e-2335.36Glycogen synthase OS=Yersinia pseudotuberculosis G... [more]
GLGA_YERPP3.389e-2335.36Glycogen synthase OS=Yersinia pestis (strain Pesto... [more]
GLGA_YERPN3.389e-2335.36Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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