FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPG (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPE (Glycogen synthase OS=Yersinia pestis GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_YERPA (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F +HN+AYQG F+ +    L+LPA+F   +  ++ Y +      I+++KAG+  +D V TVSP YA+E+       G+E  L  + R+  + GI+NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  N P+   + RL  QKG D++  A+P  +    Q++VLG+G
Sbjct:  158 FTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYGQ------ISYLKAGLFFADHVTTVSPTYAKEITQPAFGYGMEGLLQALARQGRLTGILNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLAENKPIFAVVSRLTVQKGLDLVLEALPELLALGGQLVVLGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ERWT9 (Glycogen synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 63/185 (34.05%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT----GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  F +HN+AYQG F       + LP        F D Y     G+ I+++KAG+  +D V  VSP YA+E+   E  G  ++ ++++      + GI+NG+D   WNP  D  +  +Y+   V+DAK   K  LQ  +GL +D   P+   + RL +QKG D++  A+P  +++  Q++VLG G
Sbjct:  155 KSVFTVHNLAYQGLFNARHMEQIQLP------HSFFDVYGMEFHGQ-ISYLKAGLFYADHVTAVSPTYAREITQPEF-GYGMEGLLKQRLLEGRLSGILNGVDPAIWNPAHDLLLAARYNRD-VLDAKRENKRQLQIAMGLKIDEKAPIFAVVSRLTKQKGLDLVLEALPGLLEQGGQLVVLGAG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTE (Glycogen synthase OS=Chlorobium tepidum GN=glgA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.359e-23
Identity = 61/194 (31.44%), Postives = 105/194 (54.12%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            K  K+   IHN+  QG F  + F   +L  +   + D        + G ++N +  GI  +D+V T S  YA++L+   +    +D  ++  G +  GI+NGMD ++WNP +DK I  +Y A    + K   K+ L  EVGLP     PV+G IG  ++ +G++I+ A++   ++ ++Q+IV G+G K +  +L
Sbjct:  170 KKVKVVQTIHNVYRQGVFPSKAFQK-HLDPEVCDALD--------MEGGEVNLLATGIKHADLVTTTSDRYARQLLDDPELSFGMDKALKACGDRFHGILNGMDTRQWNPSSDKLIKKRYSAEQP-EMKLEDKKVLLEEVGLPFSEETPVVGVIGSFDQYQGAEIVKASLAKLLELDIQLIVFGSGDKEFDQAL 353          

HSP 2 Score: 28.4906 bits (62), Expect = 4.359e-23
Identity = 11/28 (39.29%), Postives = 14/28 (50.00%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +DWH  L+    KT Y     +K  KVV
Sbjct:  148 HDWHAGLVALLAKTRYAKHDFFKKVKVV 175          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_PARUW (Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 71/201 (35.32%), Postives = 108/201 (53.73%), Query Frame = 2
Query:  107 GCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG-EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKY----------DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP 676
            G TK PK+ F IHN+ YQG+ A  D   + L         F+     P     IN +K GI+ SD V TVSP+YA+E+++  E +G+E   +  +   KGI+NG+D   WNP  D+++   Y          D +TV D K  +K+ L+ ++ L  + + P+IG I RL  QKG D++   I H +++  Q I+LG+   P
Sbjct:  155 GYTK-PKILFTIHNMEYQGKCAAHDLNYIGLDGNRYQQHSFMQDNLYP---HLINLLKGGIVYSDFVTTVSPNYAKEVLTPKEGRGLEATLVEYQHKFKGILNGIDYSYWNPEIDRFLPAHYSLREMPKNKKDRNTV-DKKGFIKKILREKLYL-AEEHRPIIGCITRLVPQKGIDLIKHTIRHIVEKKGQFILLGSSPIP 349          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_LACPL (Glycogen synthase OS=Lactobacillus plantarum GN=glgA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.674e-23
Identity = 71/201 (35.32%), Postives = 108/201 (53.73%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRF---AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL--KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTGKKPWRSSLNSWR 703
            K    IHN+ +QG +     +    +      ++   F D         ++NW+K GI  +D V TVSP YAQE +     G  LD ++R    K  GI+NG+D+Q ++P TD  +   Y A    D KP    K ALQ  +GLPV +N+PV+  + RL +QKG D+L  A+  F+ +++VQ+IVLGTG      +L +++
Sbjct:  159 KTVLTIHNLQFQGVYDPIILDSLFRIGTETYTEAGVAFYD---------QVNWLKGGINFADAVNTVSPTYAQE-IQTPAFGERLDGVLRANRYKLSGILNGIDMQLYDPATDLALTANYSAK---DLKPKRQNKRALQRRLGLPV-KNMPVLAVVSRLTKQKGIDLLLDALNPFLQQQDVQLIVLGTGDPALERALRTYQ 345          

HSP 2 Score: 27.335 bits (59), Expect = 5.674e-23
Identity = 12/28 (42.86%), Postives = 14/28 (50.00%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            NDWHT+ IP  L   Y     Y+  K V
Sbjct:  134 NDWHTAFIPVLLAEKYYWIEAYRDIKTV 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_DESAA (Glycogen synthase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glgA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.382e-23
Identity = 64/185 (34.59%), Postives = 106/185 (57.30%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            F IHNI Y G    ED  +L L   + S ++ ++ Y +      ++ +KAGI  ++ ++TVSP Y++E+ + E +G  LD ++RK    + GI+NG+D Q W+P TDK+I   Y  +  M  K   K+AL  E+G+     N PV G + RL  QKG +++  A+P  ++  +  I+LG G++ +
Sbjct:  161 FVIHNIGYLGYVPPEDASMLGLSNTYLS-YEGMEFYGQ------LSLLKAGIAYANKLVTVSPTYSREIQTTE-QGAGLDGLMRKRSQDLAGILNGVDFQVWSPETDKHIPCNYSTAD-MAGKGKCKKALLDEMGMDSQLMNAPVAGMVTRLFSQKGIELVIGAVPEIVENGMGFILLGNGEESY 336          

HSP 2 Score: 26.5646 bits (57), Expect = 7.382e-23
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPK 105
            V +ANDW T LIP  +   + P+
Sbjct:  134 VILANDWQTGLIPALMDQGHMPQ 156          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_NATTJ (Glycogen synthase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.601e-23
Identity = 67/198 (33.84%), Postives = 111/198 (56.06%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFA---FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV--MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPWRSSLN 694
            K    IHN+ YQG F     EDF  L+   + +   ++++ + +      I+++K G++ SD + TVSP YA+E+ S E  G+ +D ++  R+  + GI+NG+D Q++NP TD  I   Y+       + K + K  LQ ++ LPV   +P+I FI RL +QKG D++   +P  ++ E VQ + LGTG   +   L+
Sbjct:  158 KTILTIHNLKYQGIFTPHVLEDFFDLH-DHKLQHDPEYLEYHGQ------ISFLKGGLIFSDAITTVSPTYAKEIQSPE-LGMGVDGLLHKRRDDLYGILNGIDYQDYNPKTDVNIYRNYNLPDEGKTNEKLINKLRLQEDLRLPVSSRVPLIAFINRLVKQKGLDLITYVLPELLESEEVQFVFLGTGDPHYEQYLS 347          

HSP 2 Score: 28.4906 bits (62), Expect = 9.601e-23
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            NDWHT+++   LK  Y  K  Y   K +
Sbjct:  133 NDWHTAMVSPLLKYKYAHKTNYNQMKTI 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 68/185 (36.76%), Postives = 102/185 (55.14%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSD-ILAAAIPHFIKENVQIIVLGTG 667
            P   F IHN+AYQG F    F  LNLP Q          Y       K++++K GI  +D + TVSP YA+E+++ + +G  LD ++  R   + GI+NG+D +EW+P  D+++  +Y A   +  K   K ALQ    LP    IP++G +GR+  QKG D +L AA P       Q++V+G+G
Sbjct:  160 PATVFTIHNLAYQGLFPRHAFDALNLPPQLWH-------YQGLEFHGKLSFIKGGIGFADHITTVSPSYAREILTPQ-QGFGLDGLLNHRAGVLTGILNGVDYREWDPGKDRHLVARYSADD-LSGKARCKAALQHHFKLPCHSGIPLLGHVGRMVAQKGVDLLLKAAEPLLAAGEAQLVVVGSG 335          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_YERPG3.389e-2335.36Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_YERPE3.389e-2335.36Glycogen synthase OS=Yersinia pestis GN=glgA PE=3 ... [more]
GLGA_YERPA3.389e-2335.36Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_ERWT93.389e-2334.05Glycogen synthase OS=Erwinia tasmaniensis (strain ... [more]
GLGA_CHLTE4.359e-2331.44Glycogen synthase OS=Chlorobium tepidum GN=glgA PE... [more]
GLGA_PARUW4.426e-2335.32Glycogen synthase OS=Protochlamydia amoebophila (s... [more]
GLGA_LACPL5.674e-2335.32Glycogen synthase OS=Lactobacillus plantarum GN=gl... [more]
GLGA_DESAA7.382e-2334.59Glycogen synthase OS=Desulfatibacillum alkenivoran... [more]
GLGA_NATTJ9.601e-2333.84Glycogen synthase OS=Natranaerobius thermophilus (... [more]
GLGA_THISH9.860e-2336.76Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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