FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ACHLI (Glycogen synthase OS=Acholeplasma laidlawii (strain PG-8A) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.544e-18
Identity = 60/184 (32.61%), Postives = 98/184 (53.26%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQE-WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPW 679
            IHN+ YQG F  +      +   F + FD+       +   ++N++KAGI  +  + TVSP Y++E+++ E  G  LD  +  R     GI+NG+D Q  +NP TDKY+   Y  S     K L K+ L    GL  + + P+I ++GRL +QKG  ++   +   I+  N + I++G+G K +
Sbjct:  162 IHNLQYQGDFDKD------VAKFFNTDFDYTY-----IHFDRVNYLKAGIERATKINTVSPTYSKEVMTRE-YGFSLDGSLQNRINDFSGILNGIDDQNTFNPKTDKYLIKTYSVSNHKSGKNLNKQFLLEHFGLDKNLDEPLIAYVGRLADQKGLGLMEYCLEEVIQYSNAKFILMGSGDKAY 333          

HSP 2 Score: 24.2534 bits (51), Expect = 3.544e-18
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYK 99
            NDW TS+IP  L   Y+
Sbjct:  131 NDWQTSMIPYLLDKHYR 147          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_HAEIG (Glycogen synthase OS=Haemophilus influenzae (strain PittGG) GN=glgA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 61/184 (33.15%), Postives = 96/184 (52.17%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  F IHN+AYQG+F++     + LP    +    ++G        +I+++K+G+  SD    VSP YAQE+ + E   G++  L  +  +  + GI+NG+D   W+P  D+YI   Y     M  K   K  LQA   LP D +      + RL EQKG D+L  +    +K+  Q+++LG+G
Sbjct:  155 KSVFTIHNLAYQGQFSYHHLYEIGLP----TGMFHVEGLEL---FGQISYLKSGLFYSDASTAVSPTYAQEITTPEFAYGLQGLLSGLKAQDRLVGILNGVDENIWHPNVDQYIPHHYKLK-YMAGKKKNKAELQAYFNLPQDESALAFVMVTRLTEQKGVDLLIESADEIVKQGGQLMILGSG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ACIAC (Glycogen synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            T + PL L   +    P+G   V +    +HN+A+QG F  +    L +  +         G        +++ +KAG+  +D + TVSP YA+E+ + E  G  LD ++R     ++GI+NG+D   WNP  D  I   + A   ++ K   K AL+  +GL  D +  + G +GR+ EQKG D +       +++  Q+ +LG+G     S+L +
Sbjct:  143 TALAPLYLRQFRDAAGPRG-DAVARSMVTVHNLAFQGVFPMDWAQRLGIEDRHL-------GIEGAEFWGQLSMLKAGLQYADAITTVSPTYAREIQTPE-LGFGLDGVLRARAGRLQGILNGIDTALWNPSQDTLIPAPFSADR-LEGKAACKAALRRTLGLAQDGDRMLFGLVGRMTEQKGIDWVIGGAERLLRQGGQLAILGSGDPALESALRA 349          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_PROM3 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.604e-18
Identity = 59/189 (31.22%), Postives = 99/189 (52.38%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPWRSSL 691
            F IHN+ YQG + ++   +   P   +                  + M A +L +D V  VSP YA+E+ + E  G  LD ++      ++GI+NG+D+Q+W+P  DK +   + A   +  + + K+ALQ  +GL V+ +  ++G + RL +QKG D+L       +   + QI+VLGTG++   SSL
Sbjct:  149 FTIHNLKYQGPWRWKLDRMTWCPWYMQGD----------------HTMAAALLYADRVNAVSPTYAREICTSE-YGESLDGLLNYISGKLRGILNGIDLQDWDPANDKSLPATFSADD-LSGRAVNKQALQQRMGLEVNPDTYLLGMVSRLVDQKGVDLLLQVTERLLAYTDSQIVVLGTGERGLESSL 319          

HSP 2 Score: 23.0978 bits (48), Expect = 4.604e-18
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V   +DWHT +IP ++
Sbjct:  124 VLHCHDWHTGMIPVWM 139          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHITR (Glycogen synthase OS=Rhizobium tropici GN=glgA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.608e-18
Identity = 60/178 (33.71%), Postives = 94/178 (52.81%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            IHNIA+QG+F  + F  L LPA    S + I+ Y        + ++K G+  +  + TVSP YA+E+++ E  G+ L+ +I  +   + GIVNG+D   WNP TD  I   Y A+T+ + + + +  +    GL  D   P+   + RL  QKG DILA      +    ++ +LG G
Sbjct:  162 IHNIAFQGQFGADIFPGLRLPAH-AFSVEGIEYYGD------VGFLKGGLQTAHALTTVSPSYAEEILTPEF-GMGLEGVIASKAYNLYGIVNGIDADIWNPATDPMIAQTYSAATLKE-RAINRHRVVEHFGLEEDDG-PIFCVVSRLTWQKGMDILAEVASEVVHMGGKLAILGAG 329          

HSP 2 Score: 23.483 bits (49), Expect = 4.608e-18
Identity = 7/20 (35.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPK 105
            A+DW ++L+P Y++    P+
Sbjct:  136 AHDWQSALVPVYMRYYPTPE 155          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNY3 (Glycogen synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.608e-18
Identity = 63/189 (33.33%), Postives = 101/189 (53.44%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPWRSSL 691
            F IHN+AYQG +     GLL                  P   +  N M A I  ++ V TVSP YAQ++ +    G +L+ ++      + GI+NG+D + +NP  D++I   +DA + +D +   K A+Q E GL ++RN  V+G + RL EQKG D++   +  F+   + Q+I+LGTG + + + L
Sbjct:  149 FTIHNLAYQGPWR----GLLETMTWC------------PWYMQGDNVMAAAIQFANRVTTVSPTYAQQIQTPA-YGEKLEGLLSYLSGNLVGILNGIDTEIYNPAEDRFISNVFDADS-LDKRVKNKIAIQEETGLEINRNAMVVGIVARLVEQKGIDLVIQILDRFMSYTDSQLIILGTGDRHYETQL 319          

HSP 2 Score: 23.0978 bits (48), Expect = 4.608e-18
Identity = 7/25 (28.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:   10 FSGPYGEDVVFVANDWHTSLIPCYL 84
            F+  + +  +   +DWHT +IP ++
Sbjct:  115 FAWNHWKPEIIHCHDWHTGMIPVWM 139          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 63/194 (32.47%), Postives = 97/194 (50.00%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS---GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWRY 706
            F IHN+ YQGR+   +         +  S + ++ Y        +N MKAG++ ++ V TVSP YA+E+ +   GE     L  +  +  + GI+NG+D   WNP TD  I    D +     K      L+AE GL    + P++G + RL  QKG D+L  A+P  + E   ++VLG G     ++L+ W Y
Sbjct:  143 FTIHNLQYQGRWNLAEARTWTGLPDWTFSPEGVEFYGD------LNLMKAGLVFAEQVTTVSPTYAREITTPQYGEGLEGVLIRLALEGRLSGILNGLDQDRWNPRTDPDIRPYADPA----GKAANGSVLRAEFGLD---DAPILGVVSRLANQKGIDLLIEALPELV-ERWNVVVLGGGDPLLTAALHGWAY 322          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.987e-18
Identity = 63/185 (34.05%), Postives = 103/185 (55.68%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDF---GLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            ++ + IHN  +QG    E     GL   P  F   +D +     P     +N+MK GI+ S+ V TVSP++A E+  G D G  L + +   +   +G++NG+D   WNP  D++I V+Y A T ++ K   K+AL+  + L  D + P++ +IGRL+EQKG  ++  AI   + +N Q ++LG+
Sbjct:  160 RVCYTIHNFKHQGFGGPEILWATGLNREPYYFH--YDRLRDNFNPF---SLNFMKGGIVFSNFVTTVSPNHALEVQFG-DYGYGLGHTLYLHRHKFRGVLNGIDYDIWNPEIDRFIPVRYTAQT-LENKAKNKKALRDRLLLQ-DVDKPIVAYIGRLDEQKGVHLVHHAIYRSLFKNAQFVLLGS 336          

HSP 2 Score: 25.7942 bits (55), Expect = 5.987e-18
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGM 111
            +DW T L+P  L  +YK  GM
Sbjct:  136 HDWQTGLVPVLLFEIYKYHGM 156          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACHD (Glycogen synthase OS=Bacillus halodurans GN=glgA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.991e-18
Identity = 63/183 (34.43%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS---GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTG 667
            F IHN+ YQG F  + F  LL+   +  +  + +DG         IN++K  ++ SD V TVSP YAQE+ +   GE     L     KT  +GI+NG+D+++++P TD ++   Y  + +   K   K+ +Q    LP  ++IP+I  + RL E+KG  +L       +  ENVQ+ +LGTG
Sbjct:  156 FTIHNLRYQGAFPPDVFRELLHFAPEHFAGLE-MDG--------AINFLKGALVHSDRVTTVSPTYAQEIQTPAFGEGLHGLLHQERGKT--RGILNGIDLEDFDPKTDPHVTYPYKHNQMEKRKN--KQVIQRLFELPERKDIPLIAMVSRLVEEKGVPLLTQIAGELVTTENVQLAILGTG 325          

HSP 2 Score: 25.0238 bits (53), Expect = 5.991e-18
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKT 90
            +DW + LIP Y+KT
Sbjct:  132 HDWQSGLIPAYMKT 145          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA2_RHIME (Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.787e-18
Identity = 62/191 (32.46%), Postives = 101/191 (52.88%), Query Frame = 2
Query:  107 GCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            G   +P++   +HN+A+QG+F    F  L LPA+   S D ++ Y        I ++K G+  +D +  VSP YA+E++S    G+ L+ ++  R   + GIVNG+D++ W+P +D  I   Y A   +   P  ++ L    GLP D   P+   + RL  QKG D+LAA     +K    +I+ G G++
Sbjct:  152 GDDTIPRVL-TVHNLAFQGQFPAHYFPELGLPAE-AYSIDGVEYYGD------IGFLKGGLQAADAITVVSPTYAREIMSPAF-GMGLEGVMNERHADVVGIVNGIDLEVWDPSSDPCIEHHYSARVPLRRLPN-RQVLLRHFGLP-DTCGPIFASVNRLTWQKGMDLLAATAGEIVKNGGTLIIHGQGEE 331          

HSP 2 Score: 21.1718 bits (43), Expect = 7.787e-18
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLK 87
            A+DWH ++   YLK
Sbjct:  136 AHDWHAAMSLLYLK 149          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_ACHLI3.544e-1832.61Glycogen synthase OS=Acholeplasma laidlawii (strai... [more]
GLGA_HAEIG4.287e-1833.15Glycogen synthase OS=Haemophilus influenzae (strai... [more]
GLGA_ACIAC4.287e-1829.03Glycogen synthase OS=Acidovorax avenae subsp. citr... [more]
GLGA_PROM34.604e-1831.22Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_RHITR4.608e-1833.71Glycogen synthase OS=Rhizobium tropici GN=glgA PE=... [more]
GLGA1_SYNY34.608e-1833.33Glycogen synthase 1 OS=Synechocystis sp. (strain P... [more]
GLGA_DEIGD5.599e-1832.47Glycogen synthase OS=Deinococcus geothermalis (str... [more]
GLGA1_SYNJB5.987e-1834.05Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]
GLGA_BACHD5.991e-1834.43Glycogen synthase OS=Bacillus halodurans GN=glgA P... [more]
GLGA2_RHIME7.787e-1832.46Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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