FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            T +LP+ L   K      G  +  +    IHNIA+QGR   +DF  ++LP  +   F   D    PV G   N   AG+  +D  +TVS  Y  E+ +  D G  L  II      ++GIVNG+D+ EWNP  D+++       Y   T+   K   KEALQ ++GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LGTG+
Sbjct:  344 TALLPVYL---KAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYD----PVGGEHSNVFAAGLKMADRAVTVSHGYLWEIKT-MDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKEALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQVVMLGTGR 547          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.369e-28
Identity = 71/184 (38.59%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            PK  F IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E + G + G+ LD ++  R   + GI+NG+D   WNP +D  I   YD  ++  A+   K+ LQA  GL  +    + G I RL  QKG D+L  A+P  I    Q+ +LG+G
Sbjct:  159 PKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYGG------IGYLKAGLQLADRITTVSPSYAAE-IQGSEAGMGLDGLLQLRADRLSGILNGIDTDVWNPASDALISATYDVESIA-ARARNKKVLQARFGLKPEPGALLYGVISRLSWQKGLDLLLQALPQLIGGGAQLALLGSG 333          

HSP 2 Score: 28.8758 bits (63), Expect = 2.369e-28
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   19 PYGEDVVFVANDWHTSLIPCYLKTMYKP 102
            P+ +  V  A+DW T L+P YLK   +P
Sbjct:  130 PHYKPDVLHAHDWQTGLLPAYLKYSGRP 157          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.369e-28
Identity = 71/184 (38.59%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            PK  F IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E + G + G+ LD ++R     + GI+NG+D   WNP +D  I   YD  ++  A+   K+ LQA  GL  +    + G I RL  QKG D+L  A+P  I    Q+ +LG+G
Sbjct:  159 PKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYGG------IGYLKAGLQLADRITTVSPTYAAE-IQGSEAGMGLDGLLRLRADRLSGILNGIDTDVWNPASDALISATYDVESIA-ARARNKKVLQARFGLKPEPGALLYGVISRLSWQKGLDLLLEALPQLIGGGAQLALLGSG 333          

HSP 2 Score: 28.8758 bits (63), Expect = 2.369e-28
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   19 PYGEDVVFVANDWHTSLIPCYLKTMYKP 102
            P+ +  V  A+DW T L+P YLK   +P
Sbjct:  130 PHYKPDVLHAHDWQTGLLPAYLKYSGRP 157          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_KOSOT (Glycogen synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.085e-28
Identity = 75/194 (38.66%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            PK    IHN+ YQG F    F    LP +            K V+    N++K GI+ +  + TVSP YA+E+ + E  G  LD  +R    +  GI+NG+D  E+NP TDK I V +D ++ ++ K   K ALQ E+GLPV  ++PVIG I RL EQKG D++ AA    +  ++Q +VLGTG++ +     S
Sbjct:  149 PKTLLTIHNLGYQGEFDKSYFYKTGLPEKLWQE-------GKAVKNGAFNFLKTGIVTATAISTVSPTYAKEIQTPE-YGAGLDETLRALSDRLFGILNGIDYSEYNPATDKRIPVNFDINS-LEKKKENKIALQKELGLPVI-DVPVIGLISRLVEQKGFDLIEAAAEKILSNDLQFVVLGTGEERYERLFKS 332          

HSP 2 Score: 26.9498 bits (58), Expect = 3.085e-28
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMY--KPK 105
            NDW  +LIP Y+   Y  KPK
Sbjct:  130 NDWQPALIPAYISAFYNGKPK 150          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 66/195 (33.85%), Postives = 116/195 (59.49%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P G  +  +    IHN+A+QG      +  L LP ++  + +++       +   +G  +N++K  ++ +D ++TVS  Y+ E+ + E  G  L+ ++  RK+ + GIVNG+D+ +WNP TDK++   Y     +  K   K  LQ E+GLP+  ++P+IGFIGRL+ QKG D++  AIP  +++N+Q ++LG+G
Sbjct:  294 PYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEG-GQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDD-LSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSG 486          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 66/195 (33.85%), Postives = 116/195 (59.49%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P G  +  +    IHN+A+QG      +  L LP ++  + +++       +   +G  +N++K  ++ +D ++TVS  Y+ E+ + E  G  L+ ++  RK+ + GIVNG+D+ +WNP TDK++   Y     +  K   K  LQ E+GLP+  ++P+IGFIGRL+ QKG D++  AIP  +++N+Q ++LG+G
Sbjct:  294 PYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEG-GQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDD-LSGKAKCKAELQEELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSG 486          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLOB8 (Glycogen synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.015e-28
Identity = 73/189 (38.62%), Postives = 109/189 (57.67%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRF----AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  + IHNIA+QG F      E FG  ++     +   F DG         +++MK G+  SD++ TVS  YA E+ + E  G  LD ++R+    ++GI NG+D  E+NP TDK+I   Y  +++ D K + K  LQ E+GL VD+NIP++  + RL  QKG D+L       ++ENVQ+++LGTG K
Sbjct:  158 KCVYSIHNIAFQGVFDPQILPELFGF-DMELYNNTCLKFDDG---------VSYMKGGLCYSDVITTVSNTYAYEIQTPE-YGQRLDGVLRERSYALRGITNGIDYDEFNPKTDKFIKKNYSINSIED-KAINKTELQKELGLTVDKNIPMLAMVTRLTSQKGMDLLVNISDKLLQENVQLVILGTGDK 334          

HSP 2 Score: 27.335 bits (59), Expect = 4.015e-28
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMY 114
            NDW T ++P  LK  YK   M+
Sbjct:  132 NDWQTGMLPVLLKFEYKRNDMF 153          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRA5 (Glycogen synthase OS=Streptococcus agalactiae serotype V GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.016e-28
Identity = 74/181 (40.88%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E+ + E  G  LD I+R     + GIVNG+D    NP TD ++   +  S  ++ K   K ALQ  +GLP D+N+P+IG + RL +QKG DI+A+ + + +++++Q+++LGTG
Sbjct:  160 FTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANEIKTPEF-GKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSN-LEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQKGFDIIASELDNMLQQDIQMVILGTG 331          

HSP 2 Score: 26.5646 bits (57), Expect = 4.016e-28
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            DV+ V +D+HT++IP  LK  Y     Y + + VF
Sbjct:  127 DVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRAVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRA3 (Glycogen synthase OS=Streptococcus agalactiae serotype III GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.016e-28
Identity = 74/181 (40.88%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E+ + E  G  LD I+R     + GIVNG+D    NP TD ++   +  S  ++ K   K ALQ  +GLP D+N+P+IG + RL +QKG DI+A+ + + +++++Q+++LGTG
Sbjct:  160 FTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANEIKTPEF-GKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSN-LEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQKGFDIIASELDNMLQQDIQMVILGTG 331          

HSP 2 Score: 26.5646 bits (57), Expect = 4.016e-28
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            DV+ V +D+HT++IP  LK  Y     Y + + VF
Sbjct:  127 DVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRA1 (Glycogen synthase OS=Streptococcus agalactiae serotype Ia GN=glgA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.016e-28
Identity = 74/181 (40.88%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E+ + E  G  LD I+R     + GIVNG+D    NP TD ++   +  S  ++ K   K ALQ  +GLP D+N+P+IG + RL +QKG DI+A+ + + +++++Q+++LGTG
Sbjct:  160 FTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANEIKTPEF-GKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSN-LEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQKGFDIIASELDNMLQQDIQMVILGTG 331          

HSP 2 Score: 26.5646 bits (57), Expect = 4.016e-28
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            DV+ V +D+HT++IP  LK  Y     Y + + VF
Sbjct:  127 DVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRAVF 160          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
SSY22_ORYSJ7.050e-2937.74Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_RHOPT2.369e-2838.59Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPA2.369e-2838.59Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_KOSOT3.085e-2838.66Glycogen synthase OS=Kosmotoga olearia (strain TBF... [more]
SSY1_ORYSJ3.499e-2833.85Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI3.499e-2833.85Soluble starch synthase 1, chloroplastic/amyloplas... [more]
GLGA_CLOB84.015e-2838.62Glycogen synthase OS=Clostridium beijerinckii (str... [more]
GLGA_STRA54.016e-2840.88Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_STRA34.016e-2840.88Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_STRA14.016e-2840.88Glycogen synthase OS=Streptococcus agalactiae sero... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
back to top