FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_XANAC (Glycogen synthase OS=Xanthomonas axonopodis pv. citri GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 52/181 (28.73%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            IHN+AYQG   +     L +PA+  +  +F           ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+
Sbjct:  160 IHNLAYQGLVPYSMAAALGIPAERVAELEFYG---------QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDQYLDSHFSVNQWQGRQANAAQVRKA-FGLRESAG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGE 327          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLAB (Glycogen synthase OS=Chlamydophila abortus GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 55/188 (29.26%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII-RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL------KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            PK  F IHN +Y+G  + +  G   +     S++      +  V       +K  +  SD + TVSP YAQ++++        D I+ R+    GI+NG+D   WNP TD  + V+Y    +     L       K AL  ++GL ++ + P++  I R+ EQKG + + AAI H ++ +  +++ GT
Sbjct:  151 PKRIFTIHNFSYRGYCSTQLLGASEISDFGLSNYQLFRDPSTSVL------LKGALYCSDYITTVSPSYAQDILNDYSDYEIHDAIMSRRHVFCGILNGIDENIWNPETDPALAVRYGTHLLKSPDVLFTKKEENKIALYEKLGLSLEYS-PLMCVISRIVEQKGPEFMKAAILHAMENSYALVIAGT 331          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTR (Glycogen synthase OS=Chlamydia trachomatis GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.644e-13
Identity = 55/193 (28.50%), Postives = 92/193 (47.67%), Query Frame = 2
Query:  110 CTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            C+++ K+   +HN  Y+G    E     +L   + S +         V       +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT
Sbjct:  148 CSQLQKIVLTLHNFGYRGYTTREILEASSLNEFYISQYQLFRDPQTCVL------LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAENKKALYERLGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGT 332          

HSP 2 Score: 21.1718 bits (43), Expect = 1.644e-13
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:   25 GEDVVFVANDWHTSLIPCYLK 87
            G ++V + +DWHT L+   LK
Sbjct:  125 GANIVHL-HDWHTGLVAGLLK 144          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTB (Glycogen synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.644e-13
Identity = 55/193 (28.50%), Postives = 92/193 (47.67%), Query Frame = 2
Query:  110 CTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            C+++ K+   +HN  Y+G    E     +L   + S +         V       +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT
Sbjct:  148 CSQLQKIVLTLHNFGYRGYTTREILEASSLNEFYISQYQLFRDPQTCVL------LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAENKKALYERLGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGT 332          

HSP 2 Score: 21.1718 bits (43), Expect = 1.644e-13
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:   25 GEDVVFVANDWHTSLIPCYLK 87
            G ++V + +DWHT L+   LK
Sbjct:  125 GANIVHL-HDWHTGLVAGLLK 144          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLT2 (Glycogen synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.644e-13
Identity = 55/193 (28.50%), Postives = 92/193 (47.67%), Query Frame = 2
Query:  110 CTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            C+++ K+   +HN  Y+G    E     +L   + S +         V       +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT
Sbjct:  148 CSQLQKIVLTLHNFGYRGYTTREILEASSLNEFYISQYQLFRDPQTCVL------LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAENKKALYERLGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGT 332          

HSP 2 Score: 21.1718 bits (43), Expect = 1.644e-13
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:   25 GEDVVFVANDWHTSLIPCYLK 87
            G ++V + +DWHT L+   LK
Sbjct:  125 GANIVHL-HDWHTGLVAGLLK 144          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLMU (Glycogen synthase OS=Chlamydia muridarum GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 56/193 (29.02%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  110 CTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKY------DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            C ++ K+   +HN  Y+G    E     +L   + S +         V       +K  +  SD V TVSP YA+E++  +    E+ + I  R+  +KGI+NG+D    +P TD ++   Y      D     +AK   K+AL   +GL +D++ P +  I R+ EQKG + +  AI H ++    +I++GT
Sbjct:  148 CPQLQKIVLTLHNFGYRGYTTREVLEASSLNEFYLSHYQLFRDPQTCVL------LKGALYCSDFVTTVSPTYAKEILQ-DYSDYEIHDAITARQHHLKGILNGIDYTILDPETDPHLAKNYSKVLFEDPKAFFEAKAENKKALYETLGLSLDKS-PCMCIISRIAEQKGPEFMKQAILHALENAYTLIIIGT 332          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS4 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgA PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 58/188 (30.85%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQ--FKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            +HNIA+QG         L LP Q    ++ ++  G +          +KAG++ +D + TVSP YA EL+  E  G+ L  +I  R   + GI+NG+D   W+P  ++     YDA + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG  P  +++
Sbjct:  167 VHNIAFQGWAPASLLSALRLPPQEFHPAALEYYGGLSS---------LKAGLVSADHITTVSPTYACELMRPEF-GMGLQGVIAQRAGQVTGILNGVDTDIWSPEVEER---PYDAES-LKAKAENRAVLSGAFKLSVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTGDAPLEAAM 338          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_PROMP (Glycogen synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.773e-13
Identity = 54/189 (28.57%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPWRSSL 691
            F IHN+ YQG + ++   +   P                      + M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EW+P  DK +  +++    ++++   K  LQ E+GL V+    ++G + RL +QKG D++       +   + QI +LGTG +   S L
Sbjct:  149 FTIHNLKYQGPWRWKLEKMTWCPWYMHGD----------------HTMAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLNEWDPDKDKVLPAQFNIKN-LESRLENKIILQKEMGLEVNSKKYLLGMVSRLVDQKGVDLVLQVSRRLLAYTDSQIAILGTGDRSLESGL 319          

HSP 2 Score: 23.0978 bits (48), Expect = 2.773e-13
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V   +DWHT +IP ++
Sbjct:  124 VLHCHDWHTGMIPVWM 139          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTA (Glycogen synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.774e-13
Identity = 55/193 (28.50%), Postives = 92/193 (47.67%), Query Frame = 2
Query:  110 CTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 664
            C+++ K+   +HN  Y+G    E     +L   + S +         V       +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT
Sbjct:  148 CSQLQKIVLTLHNFGYRGYTTREILEASSLNEFYISQYQLFRDPQTCVL------LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAKNKKALYEILGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGT 332          

HSP 2 Score: 21.1718 bits (43), Expect = 2.774e-13
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:   25 GEDVVFVANDWHTSLIPCYLK 87
            G ++V + +DWHT L+   LK
Sbjct:  125 GANIVHL-HDWHTGLVAGLLK 144          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLPN (Glycogen synthase OS=Chlamydia pneumoniae GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 52/189 (27.51%), Postives = 87/189 (46.03%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGI-KGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL------KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            K+ F IHN  Y+G  + +      +     S +         V       MK  +  SD + TVS  Y QE+++        D I+ +  +  GI+NG+D   WNP TD  + V+YDAS + +   L       +  L  ++G+  D   P+I  I R+ E+KG + +   I H ++ +   I++GT +
Sbjct:  152 KIVFTIHNFGYRGYCSTQLLAASQIDDFHLSHYQLFRDPQTSVL------MKGALYCSDYITTVSLTYVQEIINDYSDYELHDAILARNSVFSGIINGIDEDVWNPKTDPALAVQYDASLLSEPDVLFTKKEENRAVLYEKLGISSD-YFPLICVISRIVEEKGPEFMKEIILHAMEHSYAFILIGTSQ 333          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_XANAC1.093e-1328.73Glycogen synthase OS=Xanthomonas axonopodis pv. ci... [more]
GLGA_CHLAB1.427e-1329.26Glycogen synthase OS=Chlamydophila abortus GN=glgA... [more]
GLGA_CHLTR1.644e-1328.50Glycogen synthase OS=Chlamydia trachomatis GN=glgA... [more]
GLGA_CHLTB1.644e-1328.50Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLT21.644e-1328.50Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLMU1.864e-1329.02Glycogen synthase OS=Chlamydia muridarum GN=glgA P... [more]
GLGA_RHOS42.434e-1330.85Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_PROMP2.773e-1328.57Glycogen synthase OS=Prochlorococcus marinus subsp... [more]
GLGA_CHLTA2.774e-1328.50Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLPN1.208e-1227.51Glycogen synthase OS=Chlamydia pneumoniae GN=glgA ... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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