FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CHLFF (Glycogen synthase OS=Chlamydophila felis (strain Fe/C-56) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 54/188 (28.72%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII-RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL-------KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLG 661
            PK  F IHN +Y+G  + +  G   +     S++         V       +K  +  SD + TVSP YAQ+++         D I+ R+   +GI+NG+D   WNP TD  +   Y    ++D+  +L       K AL  ++G+  + + P++  I R+ EQKG + + AAI H ++     I++G
Sbjct:  151 PKRIFTIHNFSYRGYCSTQLLGASGISEFGLSNYQLFRDPQVSVL------LKGALYCSDYITTVSPTYAQDILHDYSDYEMHDAIMARRHVFRGILNGIDDNIWNPETDSSLVANY-GKNLLDSPEILFTKKEENKVALYEKLGMSPEHS-PLLCIISRIVEQKGPEFMKAAILHAMENGYAFILVG 330          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS5 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQ--FKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            +HNIA+QG         L LPA     ++ ++  G +          +KAG++ +D + TVSP YA EL+  E  G+ L  +I  R   + GI+NG+D   W+P  ++     Y A + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG
Sbjct:  167 VHNIAFQGWAPAALLPSLRLPASEFHPAALEYYGGLSS---------LKAGLVTADHITTVSPTYACELMRPEF-GMGLQGVIAARAGQVSGILNGVDTDIWSPEAEER---PYTARS-LKAKAENRAVLSGAFKLDVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTG 330          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_CHLFF2.061e-1228.72Glycogen synthase OS=Chlamydophila felis (strain F... [more]
GLGA_RHOS53.886e-1131.11Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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