FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSS--FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN--SWRY 706
            K  + IHN+ YQGRF  E  + LL    ++ S   F + D          I++MKAGI+ +D + TVSP YA+E+ + E  G  L+ ++  R   + GI+NG+D    NP TD ++  KYD +  ++AK   KE LQ  + LP +R+IP+IG + RLEEQKG +++   I   ++EN+Q++VLGTG + +       +W+Y
Sbjct:  158 KTVYTIHNLKYQGRFGKEILWELLGFGDEYFSEDKFKYYDS---------ISFMKAGIVYADAITTVSPTYAEEIKT-EYYGEGLNGLLQSRSKDLYGILNGIDTDVNNPSTDMFLFDKYDVNN-LEAKARNKEKLQEMLHLPKNRDIPMIGIVARLEEQKGFELIKEVIEELLQENIQLVVLGTGDQRYEDMFKFFAWKY 347          

HSP 2 Score: 22.7126 bits (47), Expect = 1.153e-27
Identity = 10/33 (30.30%), Postives = 15/33 (45.45%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V   NDWHT++    L+  Y       + K V+
Sbjct:  129 VLHCNDWHTAMTIPMLRDQYFNNPKLNNIKTVY 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 73/199 (36.68%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            P G  K  +    IHNIA+QG      +  L LP Q+  + ++I       +    G  +N +K  I  +D +LTVS  Y+ E+ + E  G  L  ++  R++ + GI NG+DV +WNP TD++I   Y  +  +  K   K  LQ E+GLP+  + P+IGFIGRL+ QKG DI+ +AIP  ++ +VQ+++LG+G+K +
Sbjct:  293 PYGVYKDARSIVAIHNIAHQGVEPAVTYNNLGLPPQWYGAVEWIFPTWARAHALDTGETVNVLKGAIAVADRILTVSQGYSWEITTPEG-GYGLHELLSSRQSVLNGITNGIDVNDWNPSTDEHIASHYSIND-LSGKVQCKTDLQKELGLPIRPDCPLIGFIGRLDYQKGVDIILSAIPELMQNDVQVVMLGSGEKQY 489          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 72/189 (38.10%), Postives = 113/189 (59.79%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQ-FK-SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSS 688
            F IHN+AYQG F  +    L LP + F+  + +F D         ++++MKAG+  +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG+DV  W+P  D ++   + A  +   K   K ALQ EVGLPV   +PV G + RL EQKG D++AAA+P  +  +VQ+++LG+G   ++ +
Sbjct:  161 FTIHNLAYQGLFPKQVLPALGLPWEVFRWEAMEFFD---------QLSFMKAGLAFADALTTVSPTYAREILTPEG-GASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFTAGDLA-GKAACKAALQREVGLPVRPEVPVAGLVTRLAEQKGIDLVAAALPALLARDVQVVLLGSGDPAYQET 338          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 72/182 (39.56%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQ-FK-SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F IHN+AYQG F  +    L LP + F+  + +F D         ++++MKAG+  +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG+DV  W+P  D ++   + A   +  K   K ALQ EVGLPV   +PV G + RL EQKG D++AAA+P  +  +VQ+++LG+G
Sbjct:  161 FTIHNLAYQGLFPKQVLPALGLPWEVFRWEAMEFFD---------QLSFMKAGLAFADALTTVSPTYAREILTPEG-GASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFGAGD-LTGKAACKAALQREVGLPVRPEVPVAGLVTRLAEQKGIDLVAAALPALLARDVQVVLLGSG 331          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRAP2 (Glycogen synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.544e-27
Identity = 70/188 (37.23%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+ S E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y  +T    K   K ALQA  GL    +  V G + RL EQKG ++L  AI        Q+++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQSYE-QGCGLEGLLADRHNDLYGVLNGVDPQVWNPKKDTLIEANYSVTTANVGKAKCKTALQAMTGLAKKEDAVVFGIVTRLTEQKGLNLLIEAIGEITSRGGQVVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 2.544e-27
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 74/192 (38.54%), Postives = 110/192 (57.29%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            P   F +HN+A+QG F     G L LPA   S+F  IDG         I ++KAG+  +D + TVSP YA E+ + +D G+ LD ++RK G  + GI+NG+D   WNP TD+++  +YD + +  A+ + K A+QA +GL  D    + G + RL  QKG D++  A+P       Q+ VLGTG+    +SL
Sbjct:  156 PPCVFTVHNLAFQGWFPAHLLGALGLPA---SAF-VIDGVEY---FGGIGFLKAGLQFADAITTVSPRYATEIAT-QDGGMGLDGLLRKRGSAVHGILNGLDTATWNPATDEHLAARYDVANLA-ARAVNKRAVQARMGLAPDPRALLFGVVSRLAGQKGIDLIIEALPVLDALGAQLAVLGTGETGIEASL 338          

HSP 2 Score: 22.7126 bits (47), Expect = 2.544e-27
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 1
Query:   46 ANDWHTSLIPCYL 84
            A+DW   L+P YL
Sbjct:  136 AHDWQAGLVPAYL 148          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 83/211 (39.34%), Postives = 121/211 (57.35%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            TG++P+ L T  L    +  +K   L   IHN+ YQG F         LP  +  + D I+ Y K      IN++K GIL SD++ TVSP YAQE+ + E  G +LD ++R   + + GI+NG+D  E+NP TDK I V Y    + + K   K+ LQ E+ LP   ++PVIG I RL +QKG DIL+  + + +  +VQ ++LGTG K +
Sbjct:  142 TGLVPVYLKT--LYKDDEFFSKTVVLL-TIHNLGYQGIFDSSYMNFSGLP-DYLYNIDGIEFYGK------INFLKGGILFSDVINTVSPTYAQEIQTKE-YGEKLDGVLRLRSSDLYGILNGIDYDEYNPETDKRIYVNYSLQEI-EKKYENKKMLQKELNLPQTNDVPVIGMITRLVDQKGLDILSEVLRYILNMDVQFVLLGTGDKKY 340          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRE4 (Glycogen synthase OS=Streptococcus equi subsp. equi (strain 4047) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.312e-27
Identity = 71/194 (36.60%), Postives = 109/194 (56.19%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDF-IDGYNK-PVRGRK-INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            F IHNIA+QG+F          P      FD  I+ Y    +R    +NWMKA +L +D V TVSP YA E+ +    G  LD ++R     + GIVNG+D   +NP  D ++   + A   +  K   K+ALQ  +GLPV  ++P+IG + RL +QKG  ++   +PH ++++VQ+++LGTG   + ++  SW
Sbjct:  160 FTIHNIAFQGQFD---------PGMLGDLFDVGIERYEDGTLRWHDCLNWMKAAVLYADRVTTVSPSYAHEIQTPAF-GQGLDQVMRMEAGKLSGIVNGIDTDLFNPARDPHLPASFSAED-LSGKAATKQALQERLGLPVRADVPLIGMVSRLTDQKGFQLVLEELPHILQQDVQLVLLGTGDPDYEAAF-SW 341          

HSP 2 Score: 26.5646 bits (57), Expect = 3.312e-27
Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            D++ V +D+HT++IP  LK  Y     Y++ + VF
Sbjct:  127 DILHV-HDYHTAMIPFLLKEKYHWIQAYQAIRTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 77/220 (35.00%), Postives = 122/220 (55.45%), Query Frame = 2
Query:   56 GILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            G++P+ L        P G  K  +    IHN+A+QG      +  L LP+++  +  ++       +    G  +N +K  I+ SD ++TVS  YA E+ + E  G  L +++  RK+ I GI NG++V EWNP TD++I   Y A  V + K   K ALQ E+GLP+    P+IGFIGRL+ QKG D++  A P  + +++Q ++LG+G   + S + S
Sbjct:  292 GLVPILLAA---KYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEG-GYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDVSE-KIKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRS 506          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATN (Glycogen synthase OS=Francisella tularensis subsp. novicida (strain U112) GN=glgA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.310e-27
Identity = 68/188 (36.17%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+ + E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        Q+++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQTYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLVEAIGEITSRGGQVVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 4.310e-27
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_CLONN1.153e-2737.81Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
SSY1_SOLTU1.329e-2736.68Soluble starch synthase 1, chloroplastic/amyloplas... [more]
GLGA_ANASK1.736e-2738.10Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_ANAD21.736e-2739.56Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_FRAP22.544e-2737.23Glycogen synthase OS=Francisella philomiragia subs... [more]
GLGA_ACICJ2.544e-2738.54Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]
GLGA_THEAB2.962e-2739.34Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_STRE43.312e-2736.60Glycogen synthase OS=Streptococcus equi subsp. equ... [more]
SSY1_ARATH3.868e-2735.00Soluble starch synthase, chloroplastic/amyloplasti... [more]
GLGA_FRATN4.310e-2736.17Glycogen synthase OS=Francisella tularensis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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