FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATO (Glycogen synthase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=glgA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.611e-26
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFTELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 1.611e-26
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATH (Glycogen synthase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=glgA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.611e-26
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFTELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 1.611e-26
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATF (Glycogen synthase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=glgA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.611e-26
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFTELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 1.611e-26
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.611e-26
Identity = 68/191 (35.60%), Postives = 109/191 (57.07%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            K  F IHN+AYQG+F  +  G L LP    ++ D ++ ++       +N++KAG++ SD + TVSP YA+E+ + E +G  LD ++R     + GI+NG+D  EWNP  D ++  +Y     +  K + K  L A  GL  D   PV GF+ RL  QKG D+L  A+P  +  +++++ +G+G+ P    L
Sbjct:  162 KSVFTIHNLAYQGQFPKDVMGDLALPWDLFTAHDGLEFHDT------VNFLKAGLVFSDALTTVSPTYAREIQTPE-QGYGLDGLLRHRAHRLHGILNGVDTHEWNPEDDAFLPARYGLKD-LSGKAVCKRELLARFGLE-DGPAPVFGFVSRLAWQKGMDLLLEALPAALHADIRVVGVGSGEGPLEEGL 343          

HSP 2 Score: 25.409 bits (54), Expect = 1.611e-26
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ANDW T L+P  L+  ++  G    AK VF
Sbjct:  137 ANDWQTGLVPVALRRGFQ-TGPLAHAKSVF 165          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.096e-26
Identity = 67/186 (36.02%), Postives = 110/186 (59.14%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            P + F +HN+AYQG F +E F  L LP +     + ++ Y +      ++++K G++ +D + TVSP YA+E+ + E  G  LD ++R  K+ + GI+NG+D   WNP TD Y+   Y   T ++ K + +  L+   GLP D  + V+G +GR+ EQKG D+L   +   ++  VQ++VLG+G K
Sbjct:  156 PAVVFTVHNLAYQGLFPYETFQRLALPPRLWK-MEALEFYGQ------LSFIKGGLVFADRINTVSPSYAEEIQTPEF-GCGLDGLLRSRKSCLSGILNGIDDVAWNPATDPYLPAPYGPDT-LERKKVNRTVLRQRYGLPDDPEVAVLGMVGRMVEQKGVDLLIDILDDLLQLPVQLVVLGSGDK 332          

HSP 2 Score: 21.557 bits (44), Expect = 2.096e-26
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIP 75
            DVV   NDW T LIP
Sbjct:  133 DVVH-CNDWQTGLIP 146          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.097e-26
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP---VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP 676
            PK  F IHN+AYQG+F +E    + LP +   S D ++ Y        I ++KAG+  +D + TVSP YA E + G D G+ L+ ++R     + GI+NG+D + W+P  D+ I   YD  T+  A+   K+ALQ+  GL   RN P   + G I RL  QKG D+L   +P  + E  Q+ +LG G  P
Sbjct:  159 PKCVFTIHNLAYQGQFPYELLTRIGLPER-AFSLDGVEYYGG------IGYLKAGLQLADRITTVSPTYALE-IQGPDAGMGLEGLLRLRADRLSGILNGIDTRVWDPTADELIPATYDIETI-GARARNKQALQSRFGL---RNAPDALLYGVISRLSWQKGLDMLLDVLPGMLAEGAQLALLGAGDTP 336          

HSP 2 Score: 26.5646 bits (57), Expect = 2.097e-26
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 1
Query:   22 YGEDVVFVANDWHTSLIPCYLKTMYKP 102
            Y  D++  A+DW T L+P YL    +P
Sbjct:  132 YAPDILH-AHDWQTGLVPAYLAYSGRP 157          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_VIBCM (Glycogen synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.729e-26
Identity = 64/194 (32.99%), Postives = 106/194 (54.64%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFID-GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT-GIKGIVNGMDVQEWNPLTDKYIGVKY--DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN 694
            K    +HN  ++G F++    ++  P    S  +F+  G++       ++ ++AGI  +D V  VSP+YA EL++       +D+ +R+   + GIVNG D  EWNP TD Y+   Y  +  ++   K L K ALQ E+ LPV  ++P+ G + RL  QKG   L   +  F++ NVQ++++GTG+    + LN
Sbjct:  162 KSVLTVHNAIFKGIFSYHQLEVI--PELNLSGMEFLQYGHDH------VSMLRAGIAFADKVNAVSPNYAAELLTPLGAHGLVDDFVRRARDLHGIVNGCDYSEWNPRTDHYLPATYSDEPESMRKGKALCKTALQEELHLPVT-DVPLFGMVCRLTHQKGFHYLLPILEQFLRNNVQVVIVGTGEPEVAARLN 346          

HSP 2 Score: 35.4242 bits (80), Expect = 2.729e-26
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            ANDWHT L+P  LKT Y+    ++  K V
Sbjct:  136 ANDWHTGLVPFLLKTRYRYDSFFEQVKSV 164          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_VIBCH (Glycogen synthase OS=Vibrio cholerae GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.729e-26
Identity = 64/194 (32.99%), Postives = 106/194 (54.64%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFID-GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT-GIKGIVNGMDVQEWNPLTDKYIGVKY--DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN 694
            K    +HN  ++G F++    ++  P    S  +F+  G++       ++ ++AGI  +D V  VSP+YA EL++       +D+ +R+   + GIVNG D  EWNP TD Y+   Y  +  ++   K L K ALQ E+ LPV  ++P+ G + RL  QKG   L   +  F++ NVQ++++GTG+    + LN
Sbjct:  162 KSVLTVHNAIFKGIFSYHQLEVI--PELNLSGMEFLQYGHDH------VSMLRAGIAFADKVNAVSPNYAAELLTPLGAHGLVDDFVRRARDLHGIVNGCDYSEWNPRTDHYLPATYSDEPESMRKGKALCKTALQEELHLPVT-DVPLFGMVCRLTHQKGFHYLLPILEQFLRNNVQVVIVGTGEPEVAARLN 346          

HSP 2 Score: 35.4242 bits (80), Expect = 2.729e-26
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            ANDWHT L+P  LKT Y+    ++  K V
Sbjct:  136 ANDWHTGLVPFLLKTRYRYDSFFEQVKSV 164          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_VIBC3 (Glycogen synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.729e-26
Identity = 64/194 (32.99%), Postives = 106/194 (54.64%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFID-GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT-GIKGIVNGMDVQEWNPLTDKYIGVKY--DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN 694
            K    +HN  ++G F++    ++  P    S  +F+  G++       ++ ++AGI  +D V  VSP+YA EL++       +D+ +R+   + GIVNG D  EWNP TD Y+   Y  +  ++   K L K ALQ E+ LPV  ++P+ G + RL  QKG   L   +  F++ NVQ++++GTG+    + LN
Sbjct:  162 KSVLTVHNAIFKGIFSYHQLEVI--PELNLSGMEFLQYGHDH------VSMLRAGIAFADKVNAVSPNYAAELLTPLGAHGLVDDFVRRARDLHGIVNGCDYSEWNPRTDHYLPATYSDEPESMRKGKALCKTALQEELHLPVT-DVPLFGMVCRLTHQKGFHYLLPILEQFLRNNVQVVIVGTGEPEVAARLN 346          

HSP 2 Score: 35.4242 bits (80), Expect = 2.729e-26
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            ANDWHT L+P  LKT Y+    ++  K V
Sbjct:  136 ANDWHTGLVPFLLKTRYRYDSFFEQVKSV 164          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRU0 (Glycogen synthase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=glgA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.730e-26
Identity = 70/195 (35.90%), Postives = 111/195 (56.92%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWRYC 709
            F IHNI +QG+F     G L     F    + + DG  +      +NWMKAG+L +D V TVSP YA E+ +    G  LD ++R     + GIVNG+D + +NP  D ++   +  +  +  K   K+ LQ ++GLPV+ NIP+IG + RL +QKG DIL + +   +++++Q++VLGTG + +  +   +  C
Sbjct:  160 FTIHNIEFQGQFGPGMLGDL-----FGVGLERYEDGTLR--WNNCLNWMKAGVLYADRVTTVSPSYANEIQTVAF-GKGLDQVMRMESGKLSGIVNGIDTELYNPENDPHVTFPFSIND-LSGKAKNKKELQEQLGLPVNENIPLIGIVSRLTDQKGFDILVSELESILQQDLQMVVLGTGYQQYEEAFRWFANC 345          

HSP 2 Score: 26.5646 bits (57), Expect = 2.730e-26
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            DV+ V +D+HT++IP  LK  Y     Y+  + VF
Sbjct:  127 DVLHV-HDYHTAMIPFLLKEKYHWIQAYQKIRTVF 160          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_FRATO1.611e-2636.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATH1.611e-2636.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATF1.611e-2636.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_MYXXD1.611e-2635.60Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
GLGA1_METCA2.096e-2636.02Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]
GLGA_RHOP22.097e-2637.89Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_VIBCM2.729e-2632.99Glycogen synthase OS=Vibrio cholerae serotype O1 (... [more]
GLGA_VIBCH2.729e-2632.99Glycogen synthase OS=Vibrio cholerae GN=glgA PE=3 ... [more]
GLGA_VIBC32.729e-2632.99Glycogen synthase OS=Vibrio cholerae serotype O1 (... [more]
GLGA_STRU02.730e-2635.90Glycogen synthase OS=Streptococcus uberis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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