FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_EXIS2 (Glycogen synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glgA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 67/185 (36.22%), Postives = 109/185 (58.92%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            K  F IHN+ YQG F  E  G LL L  +  ++               +N+MKAG++ ++ + TVSP Y  E++     G  L+ ++  R   ++GI+NG+D ++++P TD+++   YD  TV + K   K ALQ E+GLPV+ ++P+ GF+ RL +QKG D+LA  +P   + + Q I+LG+G+
Sbjct:  160 KTVFTIHNLQYQGVFPEEVLGDLLGLSHEHFTAEGI-------AHNGLVNYMKAGLVHANQITTVSPSYRDEIMDPY-YGETLEPVLQHRAVDVRGILNGIDYRQFSPETDEHLVENYDVKTVEEGKAANKAALQQELGLPVNPDVPLFGFVSRLVDQKGIDLLAHILPDLFELDAQFIILGSGE 336          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRR6 (Glycogen synthase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.553e-26
Identity = 70/190 (36.84%), Postives = 110/190 (57.89%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD+I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDHILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 3.553e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRP2 (Glycogen synthase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.553e-26
Identity = 70/190 (36.84%), Postives = 110/190 (57.89%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD+I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDHILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 3.553e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOBA (Glycogen synthase OS=Rhodopirellula baltica GN=glgA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.620e-26
Identity = 74/182 (40.66%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLGTG 667
            IHN+AYQG F F+ F    L        SF++   YN+      +N++K G++ SD+V TVSP YA E+ + E  G  LD+I++     + GI+NG+D   WNP TD ++   Y      DAK   K ALQAEVGLP D ++P++G IGRL +QKG D++   +   + E    Q +VLG+G
Sbjct:  178 IHNMAYQGNFGFDAFPWTGLSWDHFRPESFEY---YNQ------LNFLKTGVVTSDVVSTVSPTYALEIQTPE-YGCGLDSILQGIPQPVAGIINGIDTNIWNPETDPHLKRNYSVVDWADAKIDNKLALQAEVGLPQDPDVPLLGLIGRLADQKGWDLILPVLKQHLAEARPTQWVVLGSG 349          

HSP 2 Score: 21.9422 bits (45), Expect = 4.620e-26
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 1
Query:   22 YGEDVVFVANDWHTSLIPCYLK 87
            Y  D+V   NDW ++L+P  L+
Sbjct:  140 YPVDLVH-CNDWQSALVPALLR 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.624e-26
Identity = 71/194 (36.60%), Postives = 110/194 (56.70%), Query Frame = 2
Query:  134 FCIHNIAYQGRF---AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            F IHN+AYQG F   A  D GL   P+ F  + D ++ Y K      +N +K  IL +D++ TVS  Y +E+++ E  G  LD ++  RK  + G++NG+D + WNP TD+ I   +        K   K+ALQ  +GL +  +IP++G + RL EQKG D+L A +P   K  +Q+++LGTG + +   L  +
Sbjct:  165 FTIHNLAYQGLFPKEAMVDMGLD--PSLF--TIDCLEYYGK------VNLIKGAILTADVINTVSETYCREILTPES-GDGLDGVLTLRKNDLYGVLNGIDYEHWNPATDRGISKNFTPGAPA-GKAANKKALQKRLGLEIAEDIPLVGMVSRLTEQKGLDLLEALLPRIAKAKLQLVLLGTGDEKYLKLLQEF 346          

HSP 2 Score: 23.0978 bits (48), Expect = 4.624e-26
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1
Query:   22 YGEDVVFVANDWHTSLIPCYLKTMYKPKG 108
            Y  D++   +DW T++IP  LK   K KG
Sbjct:  129 YRPDIIH-CHDWQTAMIPLILK---KEKG 153          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.624e-26
Identity = 70/193 (36.27%), Postives = 111/193 (57.51%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            K  F IHNIA+QG F    F   NLP +  +S D ++ Y +      IN+MKAGIL +D V TVSP YA+E+ + E  G  LD ++  R++ + G++NG+D + WNP TD  +  +Y  + +   K + +  L    G   D + PV G + RL EQKG D++ A    F+ ++ ++IVLG G+  + +++ +
Sbjct:  164 KTIFTIHNIAFQGIFPRAVFARTNLPDEL-NSVDGLEYYEQ------INFMKAGILFADRVTTVSPRYAEEIQTPEF-GCGLDGVVQTRESDLVGLLNGVDTKVWNPATDPLLPARYSRADLA-GKRVCRAELLKRFGFAPDFDGPVFGMVCRLAEQKGVDLVLANQGFFLSQSCRLIVLGAGELRYETAMKA 347          

HSP 2 Score: 24.6386 bits (52), Expect = 4.624e-26
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            DVV  A+DW  +L+P  L+   + +G   + K +F
Sbjct:  134 DVVH-AHDWQAALLPLLLREAERRQGGMLAMKTIF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRZT (Glycogen synthase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.625e-26
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 4.625e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRZP (Glycogen synthase OS=Streptococcus pneumoniae (strain P1031) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.625e-26
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 4.625e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRPS (Glycogen synthase OS=Streptococcus pneumoniae (strain CGSP14) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.625e-26
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 4.625e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRPN (Glycogen synthase OS=Streptococcus pneumoniae GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.625e-26
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 4.625e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_EXIS23.275e-2636.22Glycogen synthase OS=Exiguobacterium sibiricum (st... [more]
GLGA_STRR63.553e-2636.84Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRP23.553e-2636.84Glycogen synthase OS=Streptococcus pneumoniae sero... [more]
GLGA_RHOBA4.620e-2640.66Glycogen synthase OS=Rhodopirellula baltica GN=glg... [more]
GLGA_GEOSF4.624e-2636.60Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_OPITP4.624e-2636.27Glycogen synthase OS=Opitutus terrae (strain DSM 1... [more]
GLGA_STRZT4.625e-2636.84Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRZP4.625e-2636.84Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRPS4.625e-2636.84Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRPN4.625e-2636.84Glycogen synthase OS=Streptococcus pneumoniae GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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