FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRPI (Glycogen synthase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.625e-26
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 4.625e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRP7 (Glycogen synthase OS=Streptococcus pneumoniae (strain 70585) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.625e-26
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F   F+ + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGFERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 4.625e-26
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACC1 (Glycogen synthase OS=Bacillus cereus (strain ATCC 10987) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.625e-26
Identity = 69/184 (37.50%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK    + GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFPPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNGKLSGIVNGIDTSVYNPETDSYITAQYDADSLYE-KSKNKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 28.8758 bits (63), Expect = 4.625e-26
Identity = 10/33 (30.30%), Postives = 20/33 (60.61%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+   +Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_GEOUR (Glycogen synthase OS=Geobacter uraniireducens (strain Rf4) GN=glgA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.018e-26
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 2
Query:  128 LFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNI--IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            + F IHN+AYQG FA E    + L + +  + D ++ Y K      +N MK  IL +D++ TVS  Y +E+ + E  G  LD +  +R   + G++NG+D   W+P TD+ +   Y   T    K + K+ LQ  +GL    ++PVIG + RL  QKG D+LA  +P F++  +Q+++LGTG + +
Sbjct:  163 VMFTIHNLAYQGLFAKETLAEMGLDSSY-FTIDCLEYYGK------VNLMKGAILSADLITTVSETYCREIQTPES-GNGLDGVLGVRNADLHGVLNGLDYDLWDPATDRGLYKNYSV-TAPAGKAVNKKGLQKLLGLEPAADVPVIGIVSRLTAQKGFDLLAELMPKFVRSRLQLVILGTGDEKY 339          

HSP 2 Score: 21.557 bits (44), Expect = 6.018e-26
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLK 87
            V   +DW T+LIP  L+
Sbjct:  133 VIHCHDWQTALIPLLLR 149          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACCR (Glycogen synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.020e-26
Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFPPEVIYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYIKAQYDAESLYE-KSENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 28.8758 bits (63), Expect = 6.020e-26
Identity = 10/33 (30.30%), Postives = 20/33 (60.61%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+   +Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPLYERIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.833e-26
Identity = 68/192 (35.42%), Postives = 108/192 (56.25%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWR 703
            F IHN+AYQG F         LP+   ++ ++++ Y +      +N MK  IL +D++ TVS  Y +E+++   +G  L+ ++ + G  + GIVNG+D  EWNP  DK I   Y A  +   K   K  LQ E+G+P   ++P+IG + RL EQKG D++   +P   +  +Q ++LGTG   +   LNS+R
Sbjct:  165 FTIHNLAYQGLFPAPAIAETGLPSALFTT-EWLEYYGQ------LNLMKGAILTADLITTVSETYRREIMT-PTQGCGLEGVLARRGDDLFGIVNGIDTDEWNPAADKRIFRNYSARALA-GKAADKLELQRELGMPAAPSVPLIGMVSRLAEQKGIDLVLELLPRLAESELQFVLLGTGNACYLERLNSFR 347          

HSP 2 Score: 21.557 bits (44), Expect = 7.833e-26
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLK 87
            V   +DW T+LIP  L+
Sbjct:  133 VIHCHDWQTALIPIILR 149          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACCZ (Glycogen synthase OS=Bacillus cereus (strain ZK / E33L) GN=glgA PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 7.835e-26
Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFPPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDAGSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 28.8758 bits (63), Expect = 7.835e-26
Identity = 10/33 (30.30%), Postives = 20/33 (60.61%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+   +Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACCQ (Glycogen synthase OS=Bacillus cereus (strain Q1) GN=glgA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.835e-26
Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFPPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 28.8758 bits (63), Expect = 7.835e-26
Identity = 10/33 (30.30%), Postives = 20/33 (60.61%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+   +Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACAN (Glycogen synthase OS=Bacillus anthracis GN=glgA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.835e-26
Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFPPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 28.8758 bits (63), Expect = 7.835e-26
Identity = 10/33 (30.30%), Postives = 20/33 (60.61%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+   +Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.019e-25
Identity = 65/180 (36.11%), Postives = 98/180 (54.44%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            + +HN+AYQG F    FG L LPA +      ++ Y +      I++MK G+  +D + TVSP YA+E + G ++G  LD ++R     + GI+NG+D   WNP  D  I   Y     +  K   K  LQAE+GL  D  +P++  + RL EQKG  ++  A+P  I+   Q  +LG+G
Sbjct:  170 YTVHNLAYQGFFPAHHFGDLGLPAAYNQVHG-LEFYGQ------ISFMKGGLYFADRITTVSPTYARE-IQGAEQGCGLDGLLRDRDADLSGILNGVDDAVWNPAGDALIPATYTRRK-LTGKAQCKATLQAELGLAEDPAVPLLCVVSRLTEQKGLHLVLQALPALIERGFQFALLGSG 340          

HSP 2 Score: 29.6462 bits (65), Expect = 1.019e-25
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   19 PYGEDVVFVANDWHTSLIPCYLKTMYKPKG 108
            PY    V  A+DWH +L P YL+ +   +G
Sbjct:  133 PYWAPRVVHAHDWHAALAPAYLRALEWARG 162          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_STRPI4.625e-2636.84Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRP74.625e-2636.84Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_BACC14.625e-2637.50Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_GEOUR6.018e-2635.48Glycogen synthase OS=Geobacter uraniireducens (str... [more]
GLGA_BACCR6.020e-2638.04Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA2_GEOSL7.833e-2635.42Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
GLGA_BACCZ7.835e-2638.04Glycogen synthase OS=Bacillus cereus (strain ZK / ... [more]
GLGA_BACCQ7.835e-2638.04Glycogen synthase OS=Bacillus cereus (strain Q1) G... [more]
GLGA_BACAN7.835e-2638.04Glycogen synthase OS=Bacillus anthracis GN=glgA PE... [more]
GLGA_LEPCP1.019e-2536.11Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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