FC930008

Overview
NameFC930008
Unique NameFC930008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAA8 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAA3 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEG 639
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S EAGV+ E + +EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEG 639
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S EAGV+ E + +EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  376 FSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKA 681
            F S   D+V   VP MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G I EL  KEGE V  G  +  I+K   G    AP  + P+ A
Sbjct:   67 FYSSANDVV-IKVPSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSGTIVELFAKEGENVTVGNDLYKIAK---GEVAAAPKVEAPKAA 164          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAHJ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEK 666
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S E GV++E +  EG+TVE G  IA +   GEG  + + S++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEEGVLQEQLASEGDTVEVGQVIATV---GEGSGNASSSKE 87          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_SCHPO (Probable dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC776.15c PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  415 PFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKS 630
            P   ESIT+GTLA++LK PG+ V  DE IA +ETDK+   V +P+AGV+KE +VKEG+T+     IAVI  S
Sbjct:   48 PPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQDIAVIDTS 119          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVA 645
            VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP AG + E++ KEG+TVE    +  +      VA
Sbjct:    7 VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDTVEVNALLGAVEAGAASVA 84          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            + +  VP + ESI++GT+A++LK PGD VE  E + ++ETDKV +++ + E+GV++E++   G+TV+ G  I  IS+     +  AP+EK   K
Sbjct:    1 MAEIKVPELAESISEGTIAQWLKQPGDYVEQGEYLLELETDKVNVELTAEESGVLQEVLKDSGDTVQVGEIIGTISEGAGESSAPAPTEKTESK 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAH-VAPS-EKIPE 675
            VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP  G + E++ KEG+ VE    +  +     G++   +PS   IPE
Sbjct:    7 VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDIVEVNAVLGFVESGAAGISQSFSPSATSIPE 96          
The following BLAST results are available for this feature:
BLAST of FC930008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ODO2_STAA81.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA31.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAES2.665e-1448.15Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ2.665e-1448.15Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_DICDI4.546e-1444.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAHJ7.754e-1447.06Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_SCHPO1.323e-1354.17Probable dihydrolipoyllysine-residue succinyltrans... [more]
ODO2_BARVB1.323e-1343.59Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BACSU2.256e-1339.36Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU5.026e-1340.00Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC34002G08EF PostHarvC1 Citrus clementina cDNA clone C34002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930008 ID=FC930008; Name=FC930008; organism=Citrus clementina; type=EST; length=681bp
GGACGAAACAATCATTCATTCAACGTTGTTGTGTTCGTCTGAAGACTCTC
TCAAAGAAAACGCAACTTGTTCTGTTCGATCAAGCAGGTACATACCTGAA
CAACGATGCTGGGTGTTATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCT
GCTTCGATTTTAGGGCATTCACTGCAGACAATGAGGCCTGCAATGTCTGT
ATCTAGAGTCTCATCTATTGCAGGAAAAGAGACGTTACTGCATTCAAGAG
GATTAGGGCATATCCGGAATTTCAGTCATTTAATTTTTCCAGGTTGCTCT
AAGGGTTGTCAACCATTAAGGGATGTAATTTCTAGCACCCAGAAAGCAAC
TAACATGTATCTGTGGAGCCATCCATTTTCTTCTGAAGGAGGGGATTTGG
TTGATGCTGTTGTCCCTTTTATGGGTGAATCCATAACCGATGGTACTTTG
GCAAAATTCTTGAAGGGTCCTGGTGATAGGGTGGAACTTGATGAACCAAT
TGCTCAAATTGAAACCGATAAGGTAACGATTGATGTTGCAAGTCCAGAAG
CAGGTGTTATCAAAGAGCTTGTAGTCAAAGAAGGGGAGACTGTGGAACCA
GGTACCAAGATTGCTGTGATTTCAAAGTCTGGTGAAGGTGTAGCTCATGT
AGCTCCCTCAGAAAAAATACCAGAGAAAGCT
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