FC930008

Overview
NameFC930008
Unique NameFC930008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_RICBR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  400 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKI-------AVISKSGEGVAHVAPSEKIPEK 678
            V  +VP +GES+T+ T+AK+ K  GD V+ DE + +IET+KVT++V SP  G I +++  +G  V  G +I       AV + S E       S+ +PEK
Sbjct:    3 VKIIVPSLGESVTEATIAKWYKKEGDAVKTDELLLEIETEKVTLEVNSPCNGTIGKIIKADGANVAVGEEIGDINEGEAVATNSNEAAKPQTASQPVPEK 102          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODB2_BACSU (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Bacillus subtilis GN=bfmBB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVA 645
            +P +GES+T+GT++K+L  PGD+V   +PIA++ TDKV  +V S   G I ELV +EG+T++ G  I  I   G   A
Sbjct:    8 MPQLGESVTEGTISKWLVAPGDKVNKYDPIAEVMTDKVNAEVPSSFTGTITELVGEEGQTLQVGEMICKIETEGANPA 85          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_HUMAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  394 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSE 663
            DLV    P   ES+T+G + ++ K  GD V  DE + +IETDK ++ V SP  GVI+ L+V +G  VE GT +  + K+G   A   P+E
Sbjct:   69 DLVTVKTPAFAESVTEGDV-RWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAE 157          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_TAKRU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  394 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPS 660
            DLV    P   ES+T+G + ++ K  GD V  DE + +IETDK ++ V SP AGVI+EL+V +G  VE GT +  + K     A  APS
Sbjct:   38 DLVTVKTPAFAESVTEGDV-RWEKAVGDSVTEDEVVCEIETDKTSVQVPSPAAGVIEELLVPDGGKVEGGTPLFKLRKG--AAAEAAPS 123          
The following BLAST results are available for this feature:
BLAST of FC930008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ODO2_RICBR5.557e-1239.00Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODB2_BACSU5.557e-1244.87Lipoamide acyltransferase component of branched-ch... [more]
ODO2_HUMAN3.602e-1141.11Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_TAKRU8.024e-1143.82Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC34002G08EF PostHarvC1 Citrus clementina cDNA clone C34002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930008 ID=FC930008; Name=FC930008; organism=Citrus clementina; type=EST; length=681bp
GGACGAAACAATCATTCATTCAACGTTGTTGTGTTCGTCTGAAGACTCTC
TCAAAGAAAACGCAACTTGTTCTGTTCGATCAAGCAGGTACATACCTGAA
CAACGATGCTGGGTGTTATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCT
GCTTCGATTTTAGGGCATTCACTGCAGACAATGAGGCCTGCAATGTCTGT
ATCTAGAGTCTCATCTATTGCAGGAAAAGAGACGTTACTGCATTCAAGAG
GATTAGGGCATATCCGGAATTTCAGTCATTTAATTTTTCCAGGTTGCTCT
AAGGGTTGTCAACCATTAAGGGATGTAATTTCTAGCACCCAGAAAGCAAC
TAACATGTATCTGTGGAGCCATCCATTTTCTTCTGAAGGAGGGGATTTGG
TTGATGCTGTTGTCCCTTTTATGGGTGAATCCATAACCGATGGTACTTTG
GCAAAATTCTTGAAGGGTCCTGGTGATAGGGTGGAACTTGATGAACCAAT
TGCTCAAATTGAAACCGATAAGGTAACGATTGATGTTGCAAGTCCAGAAG
CAGGTGTTATCAAAGAGCTTGTAGTCAAAGAAGGGGAGACTGTGGAACCA
GGTACCAAGATTGCTGTGATTTCAAAGTCTGGTGAAGGTGTAGCTCATGT
AGCTCCCTCAGAAAAAATACCAGAGAAAGCT
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