FC930011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12 Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 ++VGN+ V + L +F G +E ++I D+S +GFV A A+ N + G+ + VN A +R + + ++VG++ + DA L FS ARV++ ++TGRSRGFGFV+ ++ + AI +L+G+ L R IR N A Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12 Identity = 46/175 (26.29%), Postives = 91/175 (52.00%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFN---------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 +++VG + + + L++ F G + G ++I + D+S YG+VD+ ++ A AI + G+ I G+PI + + + + D + F +F+G+LS +F F+ R+ +T + +GFG+V F N EDA+ A++ L G+++ NR +R +++ Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 53/165 (32.12%), Postives = 80/165 (48.48%), Query Frame = 2 Query: 146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLI---------------KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592 R+ + N PQ +T L+ +FSS G +E KLI K YGFV+Y + + A AI TLNG + + IKV++A SS+ + N+++ L +T + F F ++RV+ Q TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12 Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 194 LQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY-ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589 L +F + GP+ C++++ K+ Y GFVD+ A AI LNG + + IKV++A Q DT N++V +LS +TD L F + ++ + TG RG F+ F +E+AQ AI+ LN Sbjct: 94 LYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDT----NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 49/169 (28.99%), Postives = 88/169 (52.07%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 ++VGN+ + + L ++F G +E ++I + D+S +GFV A A+ + + G+ + VN A R + + + ++VG++ ++ DA L FS ARV++ +++GRSRGFGFV+ ++ + AI +L+G+ L R IR N A Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 2 Query: 164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589 N PQ +T+ L +F + GP+ C+++K K+ Y F VD+ A AI T+NG + + +KV++A + +DT N++V +L +TD L F + ++ + TGR RG FV F +E+AQ AI+ LN Sbjct: 107 NYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 2 Query: 164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 N PQ +T + +F S G +E CKL++ KD ++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 2 Query: 164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 N PQ +T + +F S G +E CKL++ KD ++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11 Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA--SSQREDTSGHFN------------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGA 643 +YVGN+ +T++ L E+F+ G + +++ D+S + FV A AI +G + G+ +KVN+ +RE S ++V +LS +T L F+ P A+V++ + +GRSRGFGF++F + E SA++ +N L R +R N A + A Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKA 297
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11 Identity = 53/192 (27.60%), Postives = 90/192 (46.88%), Query Frame = 2 Query: 83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619 +P EP+ NL P + R+V+ + ++ L++ FS+ G + ++I S +V++ + +S LAI L G+ + G PI V + A R + G ++VG L +T+ L F F + +M TGRS+G+GF++F + E A+ A+ LNG L R +R Sbjct: 149 SPVREPV--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 335 The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bpback to top |