FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631
            ++VGN+   V +  L  +F   G +E  ++I     D+S  +GFV       A  A+   N   + G+ + VN A    +R +         + ++VG++   + DA L   FS       ARV++ ++TGRSRGFGFV+  ++ +   AI +L+G+ L  R IR N A
Sbjct:  138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 46/175 (26.29%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFN---------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631
            +++VG +   + +  L++ F   G + G ++I +   D+S  YG+VD+ ++  A  AI  + G+ I G+PI  + + +  +   D +  F          +F+G+LS       +F  F+        R+    +T + +GFG+V F N EDA+ A++ L G+++ NR +R +++
Sbjct:  169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 53/165 (32.12%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLI---------------KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592
            R+  + N  PQ +T   L+ +FSS G +E  KLI               K     YGFV+Y + + A  AI TLNG  +  + IKV++A  SS+    +   N+++  L   +T   +   F  F    ++RV+  Q TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  194 LQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY-ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            L  +F + GP+  C++++  K+ Y    GFVD+     A  AI  LNG  +  + IKV++A     Q  DT    N++V +LS  +TD  L   F  +       ++  + TG  RG  F+ F  +E+AQ AI+ LN
Sbjct:   94 LYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDT----NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 49/169 (28.99%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631
            ++VGN+   + +  L ++F   G +E  ++I   + D+S  +GFV       A  A+   +   + G+ + VN A     R + +       + ++VG++  ++ DA L   FS       ARV++ +++GRSRGFGFV+  ++ +   AI +L+G+ L  R IR N A
Sbjct:   99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            N  PQ +T+  L  +F + GP+  C+++K  K+ Y F    VD+     A  AI T+NG  +  + +KV++A    +  +DT    N++V +L   +TD  L   F  +       ++  + TGR RG  FV F  +E+AQ AI+ LN
Sbjct:  107 NYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            N  PQ +T    + +F S G +E CKL++            KD ++                     YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            N  PQ +T    + +F S G +E CKL++            KD ++                     YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA--SSQREDTSGHFN------------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGA 643
            +YVGN+   +T++ L E+F+  G +   +++     D+S  + FV       A  AI   +G  + G+ +KVN+       +RE  S                ++V +LS  +T   L   F+  P    A+V++ + +GRSRGFGF++F + E   SA++ +N   L  R +R N A + A
Sbjct:  116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKA 297          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 53/192 (27.60%), Postives = 90/192 (46.88%), Query Frame = 2
Query:   83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619
            +P  EP+   NL P  +    R+V+   +  ++    L++ FS+ G +   ++I    S       +V++ + +S  LAI  L G+ + G PI V  + A   R         +   G   ++VG L   +T+  L   F  F    +  +M    TGRS+G+GF++F + E A+ A+  LNG  L  R +R
Sbjct:  149 SPVREPV--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 335          
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
ROC4_NICSY4.553e-1230.7731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
NSR1_YEAST4.553e-1226.29Nuclear localization sequence-binding protein OS=S... [more]
ELV1A_XENLA5.947e-1232.12ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
SXL_MEGSC7.767e-1232.85Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
ROC3_NICSY1.014e-1128.9928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
SXL_MUSDO1.325e-1132.43Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
ELAV4_XENTR1.325e-1130.90ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA1.325e-1130.90ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
ROC5_NICSY2.260e-1128.5733 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM23_HUMAN2.260e-1127.60Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
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