FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13266 contig Ccv1_Contig13266:157..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 54/193 (27.98%), Postives = 96/193 (49.74%), Query Frame = 2
Query:   65 HPSLLAAPQIEPILSGN--LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +P+  +AP++  + S +    P  +     S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V    + G S+G+GFV +   E A +AI  +NG  L ++++
Sbjct:   23 NPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVA-QDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210          

HSP 2 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 54/198 (27.27%), Postives = 99/198 (50.00%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDE--KQVQIPKCCRA--YNGIS 706
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ ++  EVTD      F  F   + A +   Q+ G+SRGFGFV+F   + AQ+A++++N K +  +++    A K     +E  KQ +  +  +A  Y G++
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN 337          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 54/186 (29.03%), Postives = 89/186 (47.85%), Query Frame = 2
Query:   80 AAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            AAP  E   +    P        S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V    + G S+G+GFV +   E A +AI  +NG  L ++++
Sbjct:   26 AAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVA-QDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 206          

HSP 2 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 51/198 (25.76%), Postives = 99/198 (50.00%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDE--KQVQIPKCCRA--YNGIS 706
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ +L  E+++      F  F   + A +   Q+ G+SRGFGFV++   + AQ+A++++N K +  +++    A K     +E  KQ +  +  +A  Y G++
Sbjct:  137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN 333          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++ P V  + L ++F+   P+     C+ +      Y +V++ +   A+ A+ +LN   I  +PI++  +         SG  NVF+ +L   + +  L+  FS F T    +V      GRS+G+GFV F  +E AQ+AI+ LNG  L ++Q+
Sbjct:   46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM-DVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 202          

HSP 2 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 50/175 (28.57%), Postives = 88/175 (50.29%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VYV N+  ++T+  L++ F   G +    ++ KD+S    S+GFV++    +AA+A+  +NG  +    + V  A   S RE+                    N+++ +L   V D  L   FS +   +  +VM   + G SRGFGFV++ N E+A  A+ ++NGK +G + +
Sbjct:  226 NVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 398          

HSP 3 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 60/194 (30.93%), Postives = 87/194 (44.85%), Query Frame = 2
Query:  101 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY-----ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDE 658
            I+  N  P    S   +V++ N+   + N  L E FSS G +  CK+   +      YGFV +    +A  AI  LNG  +  + + V         A S+        NV+V +L  E+TD  L   F  +   S A VM  Q +G SR FGFV+F + E A  A+  +NG  LG   +    A K +   +E
Sbjct:  117 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 48/159 (30.19%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+Y G++ P+VT A L ++F     +     C+   +    Y ++++ +   A  A+  LN   +F +PI++  +         SG  N+F+ +L   + +  LF  FS F T    +V     TGRS+G+GFV F  +E AQ+AI+ LNG  + ++Q+
Sbjct:   50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM-DVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206          

HSP 2 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 60/194 (30.93%), Postives = 86/194 (44.33%), Query Frame = 2
Query:  101 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGFVDYFDRRSAALAIVTLNG-----RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDE 658
            I+  N  P    S   ++++ N+   + N  L E FSS G +  CK+   +      YGFV +    SA  AI  LNG     + +F          A  +   T    NV+V +L  E+ +  L   F  F   S A VM  Q +G SR FGFV+F   E A SA+  +NG  LG+  +    A K +   +E
Sbjct:  121 IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313          

HSP 3 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 51/184 (27.72%), Postives = 91/184 (49.46%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            PRF      +VYV N+  ++    L++ F   G +    ++ +D+S     +GFV++    +AA A+  +NG  +    + V  A   S+RE+                S   N+++ +L   V D  L   FS +   + ++VM   + G SRGFGFV++ N E+A  A++++NGK +G + +
Sbjct:  226 PRFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 50/160 (31.25%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++   VT++ L + F   G +   +    L+ +    YG+V++ + + AA AI  LN   ++G+PI+V +++        SG  N+F+ +L   +    L   FS F      +V     +G+S+G+GFV + N+E AQ AI  LNG  L ++Q+
Sbjct:   37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194          

HSP 2 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 54/197 (27.41%), Postives = 92/197 (46.70%), Query Frame = 2
Query:  101 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF---NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQI 673
            ++  +  P    S   ++++ N+   + +  L + FSS G +  CK+          YGFV Y +  SA  AI  LNG  +  + + V       +R+ T+      NV+V +L+   TD  L   F  +   + A VM   + G+S+GFGFV+F N +DA  A+  LNG    +++    W    A    E++ ++
Sbjct:  109 VMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYVGRAQKKSERETEL 300          

HSP 3 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE---------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VYV N+    T+  L+  F   G +    ++K  +     +GFV++ +   AA A+ +LNG     +   V  A   S+RE               D     N++V +L P ++D  L   FS F T + ++VM     G S+G GFV+F   E+A  A++ L+GK + ++ +
Sbjct:  216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVM-RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 388          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            N  PQ +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   72 NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 52/168 (30.95%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  134 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            A +  S+YVG ++  V  A L E+FS  G +   ++    + K    Y +V+Y        AI  LN   I G+P ++ W    SQR+ +   SG  N+F+ +L P + +  L   FS F      +V      G+S+ FGFV +   E A++AI ++NG  L +R++
Sbjct:   48 AESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVA-TDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210          

HSP 2 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 46/182 (25.27%), Postives = 85/182 (46.70%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQ 670
            ++++ N+HP + N  L + FS+ G +  CK+   D      +GFV Y    +A  AI  +NG  +  + + V    +   RE       +   N++V ++  E ++  L   F+ +   +    +     G+S+GFGFV++   E A  A+ +LN K +  ++I    A K     +E + Q
Sbjct:  141 NIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSI-YLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQ 321          

HSP 3 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            ++YV NI  + +   L+++F+  G +    L K  +     +GFV+Y    +A  A+  LN + I GQ I V  A             Y +++ E  S +   N+F+ +L   +    L   F  F T + ARVM  + TG+S+GFGFV F + E+A  AI ++N
Sbjct:  234 NIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDE-TGKSKGFGFVCFSSPEEATKAITEMN 397          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            +V++ N+   + N  L + F++ G +  CK+ + +  +   YGFV Y    +A+ AI  +NG  +  + + V        R+       +   N++V +++PEVTD      F  +   + + +   Q+TG+SRGFGFV+F + EDA  A+ +LN K
Sbjct:  150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEK 306          

HSP 2 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 46/160 (28.75%), Postives = 76/160 (47.50%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG + P VT A+L E+FS  G +   ++    + +    Y +V+Y        A+  LN   I G+P ++ W+        T G  NVF+ +L   + +  L   F+ F      +V   +  G S+G+GFV +   E A  AI  +NG  L  +++
Sbjct:   62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKT-GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 219          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK-----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            N  PQ +T   L+ +F S G +E CKL++          YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   71 NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 51/184 (27.72%), Postives = 90/184 (48.91%), Query Frame = 2
Query:   86 PQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            P++  + +    P  +     S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V    + G S+G+GFV +   E A +AI  +NG  L ++++
Sbjct:   34 PEVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA-QDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 212          

HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 54/198 (27.27%), Postives = 98/198 (49.49%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDE--KQVQIPKCCRA--YNGIS 706
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ +L  E+ D      F  F   + A +   Q+ G+SRGFGFV+F   E AQ+A+ ++N K + ++++    A K     +E  KQ +  +  +A  Y G++
Sbjct:  143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN 339          
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PABP_NEOFI1.975e-1527.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN2.580e-1529.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH2.580e-1530.82Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH4.400e-1530.19Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP2_ARATH4.400e-1531.25Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
ELAV2_XENTR4.400e-1536.24ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
PABP_PICST5.747e-1530.95Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR5.747e-1529.30Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENLA5.747e-1536.00ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
PABP_ASPNC7.505e-1527.72Polyadenylate-binding protein, cytoplasmic and nuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
back to top