FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13266 contig Ccv1_Contig13266:157..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 51/174 (29.31%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N+  +VT+A  +++    GP     L + +K     +GFV+Y +  SA  A+  LN + + G+ +    A   S+RE                 S   N++V +L  E  D  L A F  F T + ++VM    +G SRGFGFV + + ++A  A++++NGK +G + +
Sbjct:  228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM-RDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPL 400          

HSP 2 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 48/163 (29.45%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG + P VT A+L E+F+  GP+   ++    + +    Y +V+Y +      A+  LN   I GQ  ++ W    SQR+     +G  N+F+ +L   + +  L   F+ F      +V    + G+SRGF FV +   E A +AI  +NG  L ++++
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMW----SQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKV-GTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV 204          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 2
Query:   98 PILSGNLPPRFDAS-----TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            P  SG+ P    A+        S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y        A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V    + G S+G+GFV +   E A +AI  +NG  L  +++
Sbjct:   27 PAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA-QDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV 206          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++ P+V+   L E+F+  G +   ++ +   +    SY +V+Y++   A  A+ TLN   I G+  ++ W    SQR+ +   SG  NVF+ +L   +    L+  FS F      +V+       S+GFGFV +  QE A  AI  +NG  +  +++
Sbjct:   11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV 168          

HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   +V++ N+   + +  L + FS+ G +  CK++  D +S   +GFV Y  + SA  AI  +NG  I GQ + V    +S +R + T   F NVF  +LS +V    L      +   ++  +M   K G+S+GFGF +F + E A++ + + NGK    + I    A K
Sbjct:   90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 54/169 (31.95%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  101 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            IL+G      D+ T  ++ V  +   +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +    +   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   21 ILNGTNGEADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 61/201 (30.35%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  119 PPRFDA-STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-------------------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631
            PP+  + S    ++VGN+   V +A L ++F S G +E  ++I          +GFV          A    NG  + G+P++VN      +RED                          SG+  V+VG+LS  V D  L + FS      +ARV++ + +GRS+GFGFV++ + ++ Q+AI  L+G  L  RQIR + A
Sbjct:   81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592
            R+  + N  PQ +T   L+ +FSS G +E  KLI+   +     YGFV+Y   + A  AI TLNG  +  + IKV++A  SS+    +   N+++  L   +T   +   FS F    ++RV+  Q TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592
            R+  + N  PQ +T   L+ +FSS G +E  KLI+   +     YGFV+Y + + A  AI TLNG  +  + IKV++A  SS+   T    N+++  L   +T   +   F  F    ++RV+  Q TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631
            ++++G++ P +    +Q++++S       K+++   SS      Y FV +    +A  A++  N   I G     K+NWA     + +        F++FVGDL P   D+ LF  F S++P+C+ A+++    TG SR +GFV F ++++ Q A+  + G     R +R + A
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLE-GCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 631
            S+++G++ P +    +++ FS+ G    G K+I        + Y FV+  D  S    +  LNG+ + G   P K    YA+  +R +    F+VFVGDL+ EV D  L   F   FP+C  A+V+     G SRG+GFV F ++ + + A+ +  N   LG + IR + A
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVV-TDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIA 176          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTG-----PLEGCKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592
            S+YVG++   V   +L E+FS  G      +  C+     +S  Y +V++F+   A  A+ TLN   + G+P ++ W+Y    +  T+   N+FV +L   V +A L+  FS F      +V +  + G S+G+G+V F   + A+ AI  +NG
Sbjct:  185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEF--EKGISKGYGYVHFETNDSAEKAIEKVNG 335          
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PABP_CRYNE2.852e-1429.31Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PHANO3.725e-1429.19Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1A_DICDI6.354e-1430.06Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
ELAV3_XENLA8.298e-1431.95ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ROC1_ARATH1.415e-1330.35Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ELAV1_HUMAN1.415e-1334.42ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ELV1B_XENLA1.849e-1334.42ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
CSX1_SCHPO1.849e-1327.59RNA-binding post-transcriptional regulator csx1 OS... [more]
TSP1L_DANRE2.414e-1332.16tRNA selenocysteine 1-associated protein 1-like OS... [more]
PAP1B_DICDI2.414e-1330.52Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
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