FC930011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14 Identity = 51/174 (29.31%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 +VY+ N+ +VT+A +++ GP L + +K +GFV+Y + SA A+ LN + + G+ + A S+RE S N++V +L E D L A F F T + ++VM +G SRGFGFV + + ++A A++++NGK +G + + Sbjct: 228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM-RDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPL 400 HSP 2 Score: 77.411 bits (189), Expect = 8.298e-14 Identity = 48/163 (29.45%), Postives = 82/163 (50.31%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG + P VT A+L E+F+ GP+ ++ + + Y +V+Y + A+ LN I GQ ++ W SQR+ +G N+F+ +L + + L F+ F +V + G+SRGF FV + E A +AI +NG L ++++ Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMW----SQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKV-GTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV 204
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14 Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 2 Query: 98 PILSGNLPPRFDAS-----TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 P SG+ P A+ S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y A+ LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F +V + G S+G+GFV + E A +AI +NG L +++ Sbjct: 27 PAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVA-QDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV 206
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14 Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG++ P+V+ L E+F+ G + ++ + + SY +V+Y++ A A+ TLN I G+ ++ W SQR+ + SG NVF+ +L + L+ FS F +V+ S+GFGFV + QE A AI +NG + +++ Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV 168 HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 2 Query: 122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637 P S +V++ N+ + + L + FS+ G + CK++ D +S +GFV Y + SA AI +NG I GQ + V +S +R + T F NVF +LS +V L + ++ +M K G+S+GFGF +F + E A++ + + NGK + I A K Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14 Identity = 54/169 (31.95%), Postives = 84/169 (49.70%), Query Frame = 2 Query: 101 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 IL+G D+ T ++ V + +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L + + FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 21 ILNGTNGEADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13 Identity = 61/201 (30.35%), Postives = 96/201 (47.76%), Query Frame = 2 Query: 119 PPRFDA-STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-------------------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 PP+ + S ++VGN+ V +A L ++F S G +E ++I +GFV A NG + G+P++VN +RED SG+ V+VG+LS V D L + FS +ARV++ + +GRS+GFGFV++ + ++ Q+AI L+G L RQIR + A Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13 Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 2 Query: 146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + A AI TLNG + + IKV++A SS+ + N+++ L +T + FS F ++RV+ Q TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13 Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 2 Query: 146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + + A AI TLNG + + IKV++A SS+ T N+++ L +T + F F ++RV+ Q TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13 Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 ++++G++ P + +Q++++S K+++ SS Y FV + +A A++ N I G K+NWA + + F++FVGDL P D+ LF F S++P+C+ A+++ TG SR +GFV F ++++ Q A+ + G R +R + A Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLE-GCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 631 S+++G++ P + +++ FS+ G G K+I + Y FV+ D S + LNG+ + G P K YA+ +R + F+VFVGDL+ EV D L F FP+C A+V+ G SRG+GFV F ++ + + A+ + N LG + IR + A Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVV-TDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIA 176
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTG-----PLEGCKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592 S+YVG++ V +L E+FS G + C+ +S Y +V++F+ A A+ TLN + G+P ++ W+Y + T+ N+FV +L V +A L+ FS F +V + + G S+G+G+V F + A+ AI +NG Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEF--EKGISKGYGYVHFETNDSAEKAIEKVNG 335 The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bpback to top |