FC930012

Overview
NameFC930012
Unique NameFC930012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPPA_DICDI (Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 72/178 (40.45%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  160 TMKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            T KA+ILVGG   GTR RPL+L VPK L   A KPMI H IEA   V  + E++L   +Q  V+  F+ E   +L + I    E + LGTAG L   RD +++      FVL+SD+   +P  ++++FHK HG   +IM T+++    ++YG +V +E T ++  + EKP  FV N I
Sbjct:    5 TTKAIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESVLSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLNDLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLI 182          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPAA_XENLA (Mannose-1-phosphate guanyltransferase alpha-A OS=Xenopus laevis GN=gmppa-A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 72/180 (40.00%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLN-FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV----TKVDEPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA   V  + E++L   YQP   LN FL + + +  + I   QE   LGT G +   RD+++    + FFV+N+DV SE+P   M++FHK HGG  S ++        +   YG +V    T +V  +VEKP  FV + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALNSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPLVSMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVANRDTQEVLHYVEKPGTFVSDII 181          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPAB_XENLA (Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 71/180 (39.44%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV----TKVDEPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA   V  + E++L   YQP E + +FL + + +  + I   QE   LGT G +   RD+++    + FFV+N+DV SE+P   M++FHK HGG  S ++        +   YG +V+   T +V  +VEKP  FV + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPLVPMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVSNGDTQEVLHYVEKPGTFVSDII 181          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPPA_XENTR (Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 70/180 (38.89%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV----TKVDEPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA   V  + E++L   YQP E + +FL + + +  + I   QE   LGT G +   RD+++    + FFV+N+DV S +P   M++FHK HGG  S ++        +   YG +V    T +V  +VEKP  FV + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSAFPLVPMLDFHKQHGGSQSYVILGTTANRSQSLNYGCIVANGETQEVLHYVEKPGTFVSDII 181          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPAA_DANRE (Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 74/180 (41.11%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQPEVMLN-FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSK----YGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA  K   + E++L   YQP   LN FL   +    I I   QE   LGT G +   RD+++    + FFV+N+DV SE+P  EM++F K HG   S ++       K    YG +V  E T +V  +VEKP  FV + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNEELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPLPEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDII 181          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPPA_MOUSE (Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 70/178 (39.33%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++    E FFVLN+DV S++P + M+E H+       ++ T  +  +   YG +V    T +V  +VEKP  F+ + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDII 179          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPPA_PAPAN (Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++  + E FFVLN+DV S++P + M+E H+       ++ T  +  +   YG +V    T +V  +VEKP  F+ + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDII 179          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPPA_HUMAN (Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++  + E FFVLN+DV S++P + M+E H+       ++ T  +  +   YG +V    T +V  +VEKP  F+ + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDII 179          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPPA_RAT (Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 69/178 (38.76%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++    E FFVLN+DV S++P + M++ H+       ++ T  +  +   YG +V    T +V  +VEKP  F+ + I
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPLSAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDII 179          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GMPAB_DANRE (Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 71/180 (39.44%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  163 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLN-FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG----GEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA   V  + E++L   YQP   LN F+   + +  I I   QE   LGT G +   RD+++      FF++N+DV SE+P  EM++FH+ HG    G          +   YG +V    T +V  FVEKP  FV + I
Sbjct:    2 LKAIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPNDELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPLLEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDII 181          
The following BLAST results are available for this feature:
BLAST of FC930012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
GMPPA_DICDI9.931e-2840.45Mannose-1-phosphate guanyltransferase alpha OS=Dic... [more]
GMPAA_XENLA1.098e-2640.00Mannose-1-phosphate guanyltransferase alpha-A OS=X... [more]
GMPAB_XENLA2.446e-2639.44Mannose-1-phosphate guanyltransferase alpha-B OS=X... [more]
GMPPA_XENTR1.214e-2538.89Mannose-1-phosphate guanyltransferase alpha OS=Xen... [more]
GMPAA_DANRE2.705e-2541.11Mannose-1-phosphate guanyltransferase alpha-A OS=D... [more]
GMPPA_MOUSE1.028e-2439.33Mannose-1-phosphate guanyltransferase alpha OS=Mus... [more]
GMPPA_PAPAN1.342e-2439.33Mannose-1-phosphate guanyltransferase alpha OS=Pap... [more]
GMPPA_HUMAN1.342e-2439.33Mannose-1-phosphate guanyltransferase alpha OS=Hom... [more]
GMPPA_RAT2.290e-2438.76Mannose-1-phosphate guanyltransferase alpha OS=Rat... [more]
GMPAB_DANRE6.662e-2439.44Mannose-1-phosphate guanyltransferase alpha-B OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC34002H01EF PostHarvC1 Citrus clementina cDNA clone C34002H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930012 ID=FC930012; Name=FC930012; organism=Citrus clementina; type=EST; length=699bp
GAGACAACAAAAGCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCC
GTTGACTGAGCTGTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGA
ACTCAGTTGTTTGCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGG
CTCCGTATCACAATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACG
GTTGAGGCCGTTGACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTA
ACAAACCCATGATCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTG
ACTGAAGTAGTTTTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTT
TTTGAAGGAATTTGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAG
AGACTGAGCCACTGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAA
TTGATTGACGATACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTAT
TAGTGAGTACCCATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAG
GAGAGGCCTCCATCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGT
GTGGTGGTTACGGAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAA
ACCCTAATTATTTGTTGGTAACAAAATTATGCTGGAATTTATCTTTTGA
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