FC930012

Overview
NameFC930012
Unique NameFC930012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: YBB2_SCHPO (Probable mannose-1-phosphate guanyltransferase OS=Schizosaccharomyces pombe GN=SPBC13G1.02 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 63/177 (35.59%), Postives = 94/177 (53.11%), Query Frame = 1
Query:  169 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKP*LFVGNKI 678
            A+ILVGG   GTR RPL+  VPKPL +   + MI H + AL K   V +V L   Y   V  +F+ E  +      +I   +E   LGT G L   RD+++       FV+++DV   +P  E++  H       ++M TKV  ++ S +G +V E STG+V  +V+KP  ++ N I
Sbjct:    5 AVILVGGPSRGTRFRPLSFDVPKPLFKIGGREMIYHHLAALSKIESVKDVFLVGFYDESVFKDFINEVASHFPSFNRIKYLREYNCLGTGGGLYHFRDQILKGHTSNVFVMHADVCCSFPLQELLNVHHEKKALVTLMATKVSKEDASNFGCLVEEPSTGRVLHYVDKPSSYLSNII 181          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: MPG1_SULAC (Putative mannose-1-phosphate guanyltransferase OS=Sulfolobus acidocaldarius GN=mpg1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 50/164 (30.49%), Postives = 96/164 (58.54%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            + A++L GG+ TRLRPL+L+ PK L+    KP++ + + +L +  V  + L++    + +L+ +K+    L   I+   E   LG AGPL     K   +  +   V+  D+ +E  F +++E+H++ G  A++  T+V++PS+YGV++T+    ++ + +EKP
Sbjct:    2 VSAIVLAGGYATRLRPLSLTKPKALLPVLGKPLMDYTLYSLASSDVDTIYLSLRVMADKVLDHVKQL--NLQKNIVSVIEESRLGDAGPLKFINSKY--NLSDDVIVVYGDIYAEIDFNKLLEYHQSKGCNATLTATQVEDPSRYGVLITDGH--RLIQIIEKP 159          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: STRD_STRGR (Glucose-1-phosphate thymidylyltransferase OS=Streptomyces griseus GN=strD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 53/164 (32.32%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            MKAL+L GG GTRLRP+T +  K LV  ANKP++ + +EA++A G+ +V + +    + ++  + +  ++ G+K+    +++PLG A  + ++RD L +D    F +   D        + +   +A   +A +M+T+V EP  +GV    +S G+V    EKP
Sbjct:    1 MKALVLAGGTGTRLRPITHTSAKQLVPVANKPVLFYGLEAIRAAGIIDVGIVVGDTADEIVAAVGD-GSRFGLKVSYIPQSKPLGLAHCVLISRDFLGED---DFIMYLGDNFVVGVVEDSVREFRAARPDAHLMLTRVPEPRSFGVAELSDS-GQVLGLEEKP 159          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_METM5 (Bifunctional protein glmU OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0513 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 54/164 (32.93%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            M A+IL  G GTRL P+T S PKP++  A KP++ H IE ++   V ++ L + ++ E ++ +  E       KI    + + LGT   +  A++ + DD    F VLN DVI E    E++++      E ++ ++KVD P  +GV+       KV   +EKP
Sbjct:    1 MDAIILCAGKGTRLHPITESRPKPMIPIAGKPILEHIIEKIEN-HVEKIYLVVGFEKEKIIEYFNE-----NPKIEYILQEKQLGTGHAVLTAKNFIKDD----FLVLNGDVIFEDSIDEILDY------ENAVALSKVDNPENFGVIELGYD-NKVINLLEKP 147          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_METMP (Bifunctional protein glmU OS=Methanococcus maripaludis GN=MMP1076 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            M A+IL  G GTRL P+T S PKP++  A KP+I H IE ++   V ++ L + YQ E ++++ K+       KI    + + LGT   +  A++ +  D    F VLN DVI E    E++ +      E ++ ++ VD P  +GV+       K+   +EKP
Sbjct:    1 MDAIILCAGKGTRLHPITESRPKPMIPIAGKPIIEHIIEKIEN-HVEKIYLIVGYQKEKIIDYFKD-----NPKIEYILQEKQLGTGHAVLTAKNFIKGD----FLVLNGDVIFEDSIDEILNY------ENAVSLSNVDNPENFGVIELGYD-NKIINLLEKP 147          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_METJA (Bifunctional protein glmU OS=Methanocaldococcus jannaschii GN=glmU PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            M A+IL  G G RLRPLT + PKP++  A KP++ H IE ++ + V  + L + Y+ E ++++ K        KI   ++ E  GT   +  A+D + D+    F V+N D+I E    E +++  A      + V +V  P  +GVVV ++    +E   EKP
Sbjct:    1 MDAIILCAGKGERLRPLTENRPKPMIPIAGKPILQHIIEKVEDL-VDNIYLIVKYKKEKIVDYFKNHP-----KIKFLEQGEIDGTGQAVLTAKDYVDDE----FLVINGDIIFEDDLEEFLKYKYA------VAVKEVKNPENFGVVVLDDENNIIE-LQEKP 147          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_METM7 (Bifunctional protein glmU OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0329 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            M A+IL  G GTRL P+T S PKP++  A KP++ H IE ++   V ++ L + ++ E ++ + KE       KI    + + LGT   +  A++ + DD    F VLN D+I E    E++ +      E ++ ++KV  P  +GVV       K+   +EKP
Sbjct:    1 MDAIILCAGKGTRLYPITESRPKPMIPIAGKPILEHIIEKIENY-VEKIYLVVGFEKEKIIEYFKE-----NPKIEYILQEKQLGTGHAVLTAKNFIKDD----FLVLNGDIIFEDSIDEILVY------ENAVALSKVGHPENFGVVELGYD-NKIINLLEKP 147          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_OCEIH (Bifunctional protein glmU OS=Oceanobacillus iheyensis GN=glmU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 53/174 (30.46%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  169 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP*LFVGNKIMLE 687
            A+IL  G GTR++     + K L   A +PM+ H ++ L+ V + ++V  + +  E       + +A+LG     + + E LGT   +  A D L D+ G       ++ +I    F E+I++HK  G +ASI+ TKV+ P+ YG VV  +   +VE+ VE      G +++ E
Sbjct:    6 AVILAAGQGTRMKS---KLHKMLHPVAGRPMVQHVVDQLQQVNLNKIVTIVGFGAE-------KVKAQLGSSSEFAFQKEQLGTGHAVLQAEDLLKDEKGVTVVACGDTPLIRAETFEELIQYHKKTGAKASILTTKVENPTGYGRVVRNDQ-DEVERIVEHKDANEGERLIQE 168          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: RFBF_BACSU (Probable glucose-1-phosphate cytidylyltransferase OS=Bacillus subtilis GN=yfnH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ--ETEPLG-----------------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK 651
            MKA+IL GG GTR+  +T  +PKPL     KP++ H ++  +  GV E +L + Y+ E +  +  ++E K     + S   E + LG                 TAG +  A+D + D+T   F +   D ++      +I +H+  G  A+  VT +D+ S++G +  E+  G  + F EK
Sbjct:    1 MKAVILCGGKGTRMSEVTNDIPKPLAMIGGKPILWHIMKIYQYYGVNEFILLLGYKGEKIKEYFLDYEWKHNSLTLDSSTGEVQMLGQPETWKITFLETGVDTLTAGRILQAKDYIGDET---FLLTYGDGLANINLFHLISYHQTKGAAAT--VTGIDKVSQFGTLTVED--GMAKTFSEK 175          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_METVS (Bifunctional protein glmU OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0399 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            M A+IL  G GTRL P+T + PKP++  A KP++ H IE ++   V ++ L + ++ E ++++    E     KI    + + LGT   + +A++ +  D    F VLN DVI E    E + +  A G      ++KVD P  +GV+       KV   +EKP
Sbjct:    1 MDAVILCAGSGTRLYPITENRPKPMIPIAGKPILEHIIEKIEN-HVEKIYLVVGFEKEKIIDYFYGNE-----KIEFIVQEKQLGTGHAVLMAKNYIKGD----FLVLNGDVIFESDILEFLNYENAVG------LSKVDNPENFGVIELGYD-NKVINLLEKP 147          
The following BLAST results are available for this feature:
BLAST of FC930012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
YBB2_SCHPO4.940e-1935.59Probable mannose-1-phosphate guanyltransferase OS=... [more]
MPG1_SULAC1.437e-1830.49Putative mannose-1-phosphate guanyltransferase OS=... [more]
STRD_STRGR5.112e-1632.32Glucose-1-phosphate thymidylyltransferase OS=Strep... [more]
GLMU_METM52.805e-1432.93Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METMP8.162e-1432.93Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METJA1.066e-1332.32Bifunctional protein glmU OS=Methanocaldococcus ja... [more]
GLMU_METM72.375e-1332.32Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_OCEIH3.102e-1330.46Bifunctional protein glmU OS=Oceanobacillus iheyen... [more]
RFBF_BACSU4.051e-1329.12Probable glucose-1-phosphate cytidylyltransferase ... [more]
GLMU_METVS5.290e-1332.32Bifunctional protein glmU OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionC34002H01EF PostHarvC1 Citrus clementina cDNA clone C34002H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930012 ID=FC930012; Name=FC930012; organism=Citrus clementina; type=EST; length=699bp
GAGACAACAAAAGCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCC
GTTGACTGAGCTGTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGA
ACTCAGTTGTTTGCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGG
CTCCGTATCACAATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACG
GTTGAGGCCGTTGACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTA
ACAAACCCATGATCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTG
ACTGAAGTAGTTTTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTT
TTTGAAGGAATTTGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAG
AGACTGAGCCACTGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAA
TTGATTGACGATACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTAT
TAGTGAGTACCCATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAG
GAGAGGCCTCCATCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGT
GTGGTGGTTACGGAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAA
ACCCTAATTATTTGTTGGTAACAAAATTATGCTGGAATTTATCTTTTGA
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