FC930017
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 8.720e-58 Identity = 107/173 (61.85%), Postives = 126/173 (72.83%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 +VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK ET A SVIYVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T G+GQ+ Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQT 173 HSP 2 Score: 36.965 bits (84), Expect = 8.720e-58 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDP NGTNF+D L Sbjct: 174 TAVGIGGDPVNGTNFIDVL 192
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.482e-57 Identity = 105/173 (60.69%), Postives = 127/173 (73.41%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T G+GQ+ Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQT 173 HSP 2 Score: 36.965 bits (84), Expect = 1.482e-57 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDP NGTNF+D L Sbjct: 174 TAVGIGGDPVNGTNFIDVL 192
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.482e-57 Identity = 105/173 (60.69%), Postives = 127/173 (73.41%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T G+GQ+ Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQT 173 HSP 2 Score: 36.965 bits (84), Expect = 1.482e-57 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDP NGTNF+D L Sbjct: 174 TAVGIGGDPVNGTNFIDVL 192
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.442e-51 Identity = 101/174 (58.05%), Postives = 125/174 (71.84%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG E G+PVFN+V EA ET AN S+I+VP PF ++LVVCITEGIP DM+ VK L +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T GLGQS Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQS 175 HSP 2 Score: 24.6386 bits (52), Expect = 1.442e-51 Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDP +G D + Sbjct: 176 TAVGIGGDPVHGLTHRDVI 194
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 2.220e-49 Identity = 98/175 (56.00%), Postives = 121/175 (69.14%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636 A+ VD+ T+V+ QGITG G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA E ANASVI+VP PF + ++VCITEGIP HD +++ + T LIGPNCPGII PG+ +GIMP I KPG VGIVSRSGTLTY+ + T +GLGQS V Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTV 175 HSP 2 Score: 26.9498 bits (58), Expect = 2.220e-49 Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGD GT+FV+ L Sbjct: 174 TVVGIGGDRIIGTDFVEVL 192
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.416e-48 Identity = 98/175 (56.00%), Postives = 116/175 (66.29%), Query Frame = 1 Query: 118 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636 + + K+T+VI QG TGK GTFH + EYGT +VGG PKK G HLG PVF SV +A ET A AS I+VPPP + L VCITEGIPQHDM+ + L Q KTRL+GPNCPGII P + +IGI P I + G++GI+SRSGTLTYEAV QTT LGQS V Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLV 205 HSP 2 Score: 28.4906 bits (62), Expect = 1.416e-48 Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3 Query: 636 VGIGGDPFNGTNFVDCL 686 +G+GGD F GT+F+D L Sbjct: 206 IGMGGDAFPGTDFIDAL 222
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.418e-48 Identity = 93/171 (54.39%), Postives = 114/171 (66.67%), Query Frame = 1 Query: 118 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E E NAS+I+VP PF LDLVV ITE IP HD +++ +R KT +IGPN PGII PG K+GIMP +I G +GIVSRSGTLTYE Q T G GQS Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPFAKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQS 176 HSP 2 Score: 33.8834 bits (76), Expect = 1.418e-48 Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 TCVGIGGDP G FVD L Sbjct: 177 TCVGIGGDPVTGLGFVDVL 195
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 3.696e-46 Identity = 87/176 (49.43%), Postives = 116/176 (65.91%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 ++ +D+ T ++ QGITG GTFH ++ I YG+ +VGGVTP KGG H G+PVFN+V EA T A S+ +V PPF L LV IT+GIP DM+RVK L R + +T ++GPNC GII PG+ +GIMPG+I+ PG+VG++SRSGTL YEA Q +G+G S Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGIS 177 HSP 2 Score: 31.9574 bits (71), Expect = 3.696e-46 Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDP NG++F+D L Sbjct: 178 TSVGIGGDPINGSSFLDHL 196
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 4.819e-46 Identity = 90/175 (51.43%), Postives = 119/175 (68.00%), Query Frame = 1 Query: 115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636 A+ VD+NTRVI QGITG G+F ++ ++YGTK+VGGVTP KGG+E G+PV+N+V EA AET A+ S+IYVP F L LVVC+TEGIP +D + + L R+ K+ L+GPNCPG+I PG K+G++P G +G+VSRSGTLTY+ T G+GQS V Sbjct: 5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTV 178 HSP 2 Score: 29.6462 bits (65), Expect = 4.819e-46 Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDP G FVD L Sbjct: 177 TVVGIGGDPMPGLTFVDVL 195
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.506e-44 Identity = 93/178 (52.25%), Postives = 121/178 (67.98%), Query Frame = 1 Query: 109 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636 QP +F+DK+TRV+ QGI G G +H+ EYGTK+VG V PKK G GLP+F ++ E T ANAS+I+VP P + LVVCITE IPQHDM++VK + +++ +LIGPNCPG+I+PG K+GI+P I + G++GIVSRSGTLTYEA + TT GLGQS V Sbjct: 12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTV 187 HSP 2 Score: 25.7942 bits (55), Expect = 1.506e-44 Identity = 11/19 (57.89%), Postives = 12/19 (63.16%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 T VGIGGDPF G D + Sbjct: 186 TVVGIGGDPFAGQLHTDVI 204 The following BLAST results are available for this feature:
BLAST of FC930017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930017 ID=FC930017; Name=FC930017; organism=Citrus clementina; type=EST; length=688bpback to top |