FC930017

Overview
NameFC930017
Unique NameFC930017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 8.720e-58
Identity = 107/173 (61.85%), Postives = 126/173 (72.83%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQT 173          

HSP 2 Score: 36.965 bits (84), Expect = 8.720e-58
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDP NGTNF+D L
Sbjct:  174 TAVGIGGDPVNGTNFIDVL 192          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.482e-57
Identity = 105/173 (60.69%), Postives = 127/173 (73.41%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQT 173          

HSP 2 Score: 36.965 bits (84), Expect = 1.482e-57
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDP NGTNF+D L
Sbjct:  174 TAVGIGGDPVNGTNFIDVL 192          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.482e-57
Identity = 105/173 (60.69%), Postives = 127/173 (73.41%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQT 173          

HSP 2 Score: 36.965 bits (84), Expect = 1.482e-57
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDP NGTNF+D L
Sbjct:  174 TAVGIGGDPVNGTNFIDVL 192          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.442e-51
Identity = 101/174 (58.05%), Postives = 125/174 (71.84%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630
            A+ V+K+T+V+ QGITGK G+FH +Q  EYGT++V GVTP KGG E  G+PVFN+V EA  ET AN S+I+VP PF            ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T  GLGQS
Sbjct:    2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQS 175          

HSP 2 Score: 24.6386 bits (52), Expect = 1.442e-51
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDP +G    D +
Sbjct:  176 TAVGIGGDPVHGLTHRDVI 194          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.220e-49
Identity = 98/175 (56.00%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636
            A+ VD+ T+V+ QGITG  G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA  E  ANASVI+VP PF            + ++VCITEGIP HD +++   +     T LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +  T +GLGQS V
Sbjct:    2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTV 175          

HSP 2 Score: 26.9498 bits (58), Expect = 2.220e-49
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGD   GT+FV+ L
Sbjct:  174 TVVGIGGDRIIGTDFVEVL 192          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.416e-48
Identity = 98/175 (56.00%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  118 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636
            + + K+T+VI QG TGK GTFH   + EYGT +VGG  PKK G  HLG PVF SV +A  ET A AS I+VPPP             + L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGII P  + +IGI P  I + G++GI+SRSGTLTYEAV QTT   LGQS V
Sbjct:   31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLV 205          

HSP 2 Score: 28.4906 bits (62), Expect = 1.416e-48
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  636 VGIGGDPFNGTNFVDCL 686
            +G+GGD F GT+F+D L
Sbjct:  206 IGMGGDAFPGTDFIDAL 222          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.418e-48
Identity = 93/171 (54.39%), Postives = 114/171 (66.67%), Query Frame = 1
Query:  118 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630
            + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E   E   NAS+I+VP PF           LDLVV ITE IP HD +++    +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q T  G GQS
Sbjct:    7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPFAKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQS 176          

HSP 2 Score: 33.8834 bits (76), Expect = 1.418e-48
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            TCVGIGGDP  G  FVD L
Sbjct:  177 TCVGIGGDPVTGLGFVDVL 195          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.696e-46
Identity = 87/176 (49.43%), Postives = 116/176 (65.91%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630
            ++ +D+ T ++ QGITG  GTFH ++ I YG+ +VGGVTP KGG  H G+PVFN+V EA   T A  S+ +V PPF            L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII PG+  +GIMPG+I+ PG+VG++SRSGTL YEA  Q   +G+G S
Sbjct:    2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGIS 177          

HSP 2 Score: 31.9574 bits (71), Expect = 3.696e-46
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDP NG++F+D L
Sbjct:  178 TSVGIGGDPINGSSFLDHL 196          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.819e-46
Identity = 90/175 (51.43%), Postives = 119/175 (68.00%), Query Frame = 1
Query:  115 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF-XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636
            A+ VD+NTRVI QGITG  G+F  ++ ++YGTK+VGGVTP KGG+E  G+PV+N+V EA AET A+ S+IYVP  F            L LVVC+TEGIP +D + +   L R+ K+ L+GPNCPG+I PG  K+G++P      G +G+VSRSGTLTY+     T  G+GQS V
Sbjct:    5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTV 178          

HSP 2 Score: 29.6462 bits (65), Expect = 4.819e-46
Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDP  G  FVD L
Sbjct:  177 TVVGIGGDPMPGLTFVDVL 195          
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.506e-44
Identity = 93/178 (52.25%), Postives = 121/178 (67.98%), Query Frame = 1
Query:  109 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSPV 636
            QP +F+DK+TRV+ QGI G  G +H+    EYGTK+VG V PKK G    GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I + G++GIVSRSGTLTYEA + TT  GLGQS V
Sbjct:   12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTV 187          

HSP 2 Score: 25.7942 bits (55), Expect = 1.506e-44
Identity = 11/19 (57.89%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  630 TCVGIGGDPFNGTNFVDCL 686
            T VGIGGDPF G    D +
Sbjct:  186 TVVGIGGDPFAGQLHTDVI 204          
The following BLAST results are available for this feature:
BLAST of FC930017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_STAAC8.720e-5861.85Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAES1.482e-5760.69Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ1.482e-5760.69Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE1.442e-5158.05Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD2_ARCFU2.220e-4956.00Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCA_YEAST1.416e-4856.00Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
SUCD_METTH1.418e-4854.39Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
MTKB_METEA3.696e-4649.43Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD1_ARCFU4.819e-4651.43Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCA2_TRIVA1.506e-4452.25Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]

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Properties
Property NameValue
Genbank descriptionC34002H06EF PostHarvC1 Citrus clementina cDNA clone C34002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930017 ID=FC930017; Name=FC930017; organism=Citrus clementina; type=EST; length=688bp
GGATGTCGCAGACCCTCTACTGCTTCTTCCGTTTCACATTACAGATTATC
AACGTCGGCGGGGCCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGG
CGGCGTCTCAGCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGC
CAAGGCATCACCGGAAAAAACGGCACGTTCCATACCGAACAAGCCATCGA
ATACGGCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTG
AGCACTTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAA
ACGAAGGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGC
TATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCG
AAGGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGG
CAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAAACC
TGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAACCTGGGC
GGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAGTTTTT
CAAACAACTGTAGTTGGCCTTGGACAATCACCTGTGTAGGTATAGGTGGG
GATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGA
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