FC930019

Overview
NameFC930019
Unique NameFC930019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: DKGB_SALTY (2,5-diketo-D-gluconic acid reductase B OS=Salmonella typhimurium GN=dkgB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3
Query:    9 EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS 353
            E A+G+AIAE+        R +L+IT+K+W  N   D++IP++K+SL  L+ +Y+DL LIHWP      S EE                     +A+ E+++ GLT+ IG+SNF+
Sbjct:   42 EAAVGQAIAES-----GVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIHWPSPGDAVSVEE-------------------FMQALLEAKKQGLTREIGISNFT 132          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: DKGB_SALTI (2,5-diketo-D-gluconic acid reductase B OS=Salmonella typhi GN=dkgB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3
Query:    9 EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS 353
            E A+G+AIAE+        R +L+IT+K+W  N   D++IP++K+SL  L+ +Y+DL LIHWP      S EE                     +A+ E+++ GLT+ IG+SNF+
Sbjct:   42 EAAVGQAIAES-----GVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIHWPSPGDAVSVEE-------------------FMQALLEAKKQGLTREIGISNFT 132          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: DKGB_ECOLI (2,5-diketo-D-gluconic acid reductase B OS=Escherichia coli (strain K12) GN=dkgB PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3
Query:    9 EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS 353
            E A+G+AIAE+        R +L+IT+K+W  N   D++IP++K+SL  L+ +Y+DL LIHWP      S EE                     +A+ E+++ GLT+ IG+SNF+
Sbjct:   42 EAAVGQAIAES-----GVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEE-------------------FMQALLEAKKQGLTREIGISNFT 132          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: YER5_SCHPO (Uncharacterized oxidoreductase C2F3.05c OS=Schizosaccharomyces pombe GN=SPAC2F3.05c PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 2.229e-12
Identity = 23/75 (30.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVV 720
            ++E+HP   Q+K+ ++C+ KG+ + AY+PL   G ++G+ Q++       IA  + K+ AQ+ +R+ +++G  V+
Sbjct:  162 QIELHPFCSQQKVVDYCESKGIQLAAYAPL-VHGEKFGNKQLL------AIASKYNKSEAQIMIRYCLQRGFIVL 229          

HSP 2 Score: 43.5134 bits (101), Expect = 2.229e-12
Identity = 33/121 (27.27%), Postives = 55/121 (45.45%), Query Frame = 3
Query:   60 TSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTIL-TFATIPPSINQVSL 419
            T RE ++ TSKL   + +    + +I  S+ A  + Y+DL+L+H P   +  S                       W+A+E+    G  ++IG+SNF    I  +L +   I P +NQ+ L
Sbjct:   69 TKREDIWFTSKLNDLSGYKS-TLSSIDASVKACGLGYIDLFLLHSPYGDRIES-----------------------WKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIEL 165          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: DKGB_ECO57 (2,5-diketo-D-gluconic acid reductase B OS=Escherichia coli O157:H7 GN=dkgB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 3
Query:    9 EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS 353
            E A+G AIAE+        R +L+IT+K+W  N   D++IP++K+SL  L+ +Y+DL LIHWP      S EE                     +A+ E+++ GLT+ IG+SNF+
Sbjct:   42 EAAVGLAIAES-----GVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEE-------------------FMQALLEAKKEGLTREIGISNFT 132          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: DKGB_YERPE (2,5-diketo-D-gluconic acid reductase B OS=Yersinia pestis GN=dkgB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 3
Query:    9 EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEE---SQRLGLTKSIGLSNFS 353
            E  +G+AI E+   G+  +R++LFIT+K+W  N   D++IP++++S+  L+ +Y+DL LIHWP                      SP D   V E M E   ++ LGLT+ IG+SNF+
Sbjct:   42 EAPVGQAIQES---GI--NRDELFITTKIWIANLSKDKLIPSLRESIQKLKTDYVDLTLIHWP----------------------SPNDEVSVAEFMSELLKAKGLGLTRQIGISNFT 132          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: ARA1_YEAST (D-arabinose dehydrogenase [NAD(P)+] heavy chain OS=Saccharomyces cerevisiae GN=ARA1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    6 TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEV-GMSLPNKEDLSPLDYKGVWEAMEESQRL---------GLTKSIGLSNFSCKKIDTILTFATIPPSINQVS----LPQ 425
            TE  +GEAI E L  G +  RE LFIT+K+W      D V  ++ +SL AL +EY+DL L HWP+  +   + + + G+     +D     Y    + +E  ++L            ++IG+SNFS + ++ ++    + P++NQV     LPQ
Sbjct:   73 TEPFVGEAIKELLEDGSI-KREDLFITTKVW--PVLWDEVDRSLNESLKALGLEYVDLLLQHWPLCFEKIKDPKGISGLVKTPVDDSGKTMYAADGDYLETYKQLEKIYLDPNDHRVRAIGVSNFSIEYLERLIKECRVKPTVNQVETHPHLPQ 223          
The following BLAST results are available for this feature:
BLAST of FC930019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
DKGB_SALTY3.243e-1336.522,5-diketo-D-gluconic acid reductase B OS=Salmonel... [more]
DKGB_SALTI3.243e-1336.522,5-diketo-D-gluconic acid reductase B OS=Salmonel... [more]
DKGB_ECOLI5.532e-1336.522,5-diketo-D-gluconic acid reductase B OS=Escheric... [more]
YER5_SCHPO2.229e-1230.67Uncharacterized oxidoreductase C2F3.05c OS=Schizos... [more]
DKGB_ECO572.745e-1236.522,5-diketo-D-gluconic acid reductase B OS=Escheric... [more]
DKGB_YERPE2.324e-1136.442,5-diketo-D-gluconic acid reductase B OS=Yersinia... [more]
ARA1_YEAST5.178e-1131.82D-arabinose dehydrogenase [NAD(P)+] heavy chain OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002H08EF PostHarvC1 Citrus clementina cDNA clone C34002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930019 ID=FC930019; Name=FC930019; organism=Citrus clementina; type=EST; length=724bp
ACGGAACCGAGAAGGCTCTGGGAGAAGCAATAGCCGAAGCACTCAGGCTT
GGCCTCGTCACTTCCCGTGAACAACTCTTCATCACTTCCAAGCTCTGGTG
CCACAACGCTCATCACGACCGCGTTATCCCGGCAATAAAGAAGTCTCTCA
GTGCGCTTCAAATGGAATATTTAGACCTCTACCTCATTCACTGGCCCATC
AGTGCTAAGCCAACATCAGAGGAGGAAGAGGTTGGAATGTCTCTGCCTAA
TAAAGAGGACCTTTCACCTTTGGACTACAAGGGCGTGTGGGAAGCCATGG
AAGAATCTCAAAGGCTCGGCCTCACTAAGTCCATTGGTCTCAGCAACTTC
TCTTGCAAGAAGATTGACACTATACTCACCTTCGCTACCATCCCTCCTTC
CATCAATCAGGTGAGCTTGCCACAAACTATGTTTGTACGAACTCATATGA
CATAATATGATTGGTTGAATGAAAGCAACACGTATTTCTTTTTTGAAGGT
GGAGATGCACCCTGTCTGGCAACAAAGGAAGCTTAGAGAATTTTGCAAGG
TCAAGGGCATGAATGTCACGGCGTACTCACCTTTGGGAGCCGTAGGGACA
AGATGGGGAAGCAATCAAGTCATGGAGAATGAAGCACTAAAGCAGATTGC
AGAGGCTCATGGCAAGACTGTCGCTCAGGTTTCTCTTAGATGGATAGTTG
AGCAAGGAGTGACAGTTGTTGTCA
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