FC930019

Overview
NameFC930019
Unique NameFC930019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: YBN4_SCHPO (Uncharacterized oxidoreductase C8E4.04 OS=Schizosaccharomyces pombe GN=SPBC8E4.04 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 61/158 (38.61%), Postives = 88/158 (55.70%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIP-AIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGV-----WEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVS----LPQTMFVRTH 446
            G EK +GE I E+        R  +++TSKLWC NAH   ++P A++K+L  L +EY+D YLIHWP +     EE      LP  E    L Y+ V     W+AMEE    G  + IG+SNF+ + +D +L  A + P+I+Q+     LPQT ++  H
Sbjct:   60 GNEKEIGEGIRES-----GVPRTDIWVTSKLWC-NAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFALLSGPEE------LPRNEK-GELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQMELHPYLPQTEYLEKH 204          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y2407_MYCS2 (Uncharacterized oxidoreductase MSMEG_2407 OS=Mycobacterium smegmatis GN=MSMEG_2407 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.152e-19
Identity = 41/139 (29.50%), Postives = 70/139 (50.36%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G AIA +   G+   R+++++T+KL   +        A + SL  L ++Y+DLYLIHWP     TS+                  Y   W  + + +  G+ +SIG+ NF  + ++TI++     P++NQ+ L
Sbjct:   59 GNEAAVGRAIAAS---GI--PRDEIYVTTKLATPDQGFTSSQAAARASLERLGLDYVDLYLIHWP--GGDTSK------------------YVDSWGGLMKVKEDGIARSIGVCNFGAEDLETIVSLTYFTPAVNQIEL 172          

HSP 2 Score: 53.9138 bits (128), Expect = 1.152e-19
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVV 720
            ++E+HP+  Q  LRE      +   AY PLG         +++++ A+  IAEAHG+T AQV LRW ++ G  V+
Sbjct:  169 QIELHPLLNQAALREVNAGYNIVTEAYGPLGV-------GRLLDHPAVTAIAEAHGRTAAQVLLRWSIQLGNVVI 236          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: YOF5_CAEEL (Uncharacterized oxidoreductase ZK1290.5 OS=Caenorhabditis elegans GN=ZK1290.5 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.270e-19
Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIH------WPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G EK LG A+           RE++F+++KLW  +   D V  A + S   LQ +YLD+Y+IH      W ++ K T E+                     W  ME        +SIG+SN+S + +D +L FA+I P  NQV L
Sbjct:   50 GVEKQLGIAVKNCS-----VPREEMFLSTKLWPVDCG-DEVYNAFQTSCEKLQTDYLDMYMIHMPQLPDWIVNQKETKEK--------------------TWRQMELLYEDEHVRSIGVSNYSIEDLDELLEFASILPHANQVEL 168          

HSP 2 Score: 48.9062 bits (115), Expect = 4.270e-19
Identity = 25/75 (33.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVV 720
            +VE+HP + Q  L+ +C   G+    Y PL          + +E+E L +IA  + K+ AQ+ LRW ++Q V  V
Sbjct:  165 QVELHPWFHQADLKNYCDELGILTMGYCPLA-------KGKYLEDETLCKIASKYQKSPAQICLRWSIQQNVPTV 232          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y2999_MYCTA (Uncharacterized oxidoreductase MRA_2999 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_2999 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.285e-19
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G AIA +       +RE+LF+T+KL   +    R   A + SL  L ++Y+DLYLIHWP  A P  +                  Y   W  M +S+  G  +SIG+SNF+ + I+ ++    + P++NQ+ L
Sbjct:   58 GNEAAVGRAIAAS-----GVAREELFVTTKLATPDQGFTRSQEACRASLDRLGLDYVDLYLIHWP--APPVGK------------------YVDAWGGMIQSRGEGHARSIGVSNFTAENIENLIDLTFVTPAVNQIEL 171          

HSP 2 Score: 40.817 bits (94), Expect = 4.285e-19
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVV 723
            ++E+HP+  Q +LR+      +   +Y PL A+G      ++++N  +  IA  + KT AQV LRW ++ G  VVV
Sbjct:  168 QIELHPLLNQDELRKANAQHTVVTQSYCPL-ALG------RLLDNPTVTSIASEYVKTPAQVLLRWNLQLGNAVVV 236          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y2971_MYCTU (Uncharacterized oxidoreductase Rv2971/MT3049 OS=Mycobacterium tuberculosis GN=Rv2971 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.285e-19
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G AIA +       +RE+LF+T+KL   +    R   A + SL  L ++Y+DLYLIHWP  A P  +                  Y   W  M +S+  G  +SIG+SNF+ + I+ ++    + P++NQ+ L
Sbjct:   58 GNEAAVGRAIAAS-----GVAREELFVTTKLATPDQGFTRSQEACRASLDRLGLDYVDLYLIHWP--APPVGK------------------YVDAWGGMIQSRGEGHARSIGVSNFTAENIENLIDLTFVTPAVNQIEL 171          

HSP 2 Score: 40.817 bits (94), Expect = 4.285e-19
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVV 723
            ++E+HP+  Q +LR+      +   +Y PL A+G      ++++N  +  IA  + KT AQV LRW ++ G  VVV
Sbjct:  168 QIELHPLLNQDELRKANAQHTVVTQSYCPL-ALG------RLLDNPTVTSIASEYVKTPAQVLLRWNLQLGNAVVV 236          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: YDG7_SCHPO (Uncharacterized oxidoreductase C26F1.07 OS=Schizosaccharomyces pombe GN=SPAC26F1.07 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIP-AIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKG----VWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVS----LPQTMFVR------THMT*YDWLNESNTYF 488
            G E  +G+ I E+        R+ +++TSKLWC NAH    +P A++K+L  L+++YLD YLIHWP+S K T E++      P  +D + +  K      W+AME+    G  + IGLSNF+   ++ IL  A + P+++Q+     LPQT FV        H+T Y      NT +
Sbjct:   61 GNEDEVGDGIKES-----GVPRKDIWVTSKLWC-NAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPVSFK-TGEDK-----FPKDKDGNLIYEKNPIEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHPFLPQTEFVEKHKKLGIHVTAYSPFGNQNTIY 225          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y2996_MYCBO (Uncharacterized oxidoreductase Mb2996 OS=Mycobacterium bovis GN=Mb2996 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.572e-19
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G AIA +       +RE+LF+T+KL   +    R   A + SL  L ++Y+DLYLIHWP  A P  +                  Y   W  M +S+  G  +SIG+SNF+ + I+ ++    + P++NQ+ L
Sbjct:   58 GNEAAVGRAIAAS-----GVAREELFVTTKLATPDQGFTRSQEACRASLDRLGLDYVDLYLIHWP--APPVGK------------------YVDAWGGMIQSRGEGHARSIGVSNFTAEHIENLIDLTFVTPAVNQIEL 171          

HSP 2 Score: 40.817 bits (94), Expect = 5.572e-19
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVV 723
            ++E+HP+  Q +LR+      +   +Y PL A+G      ++++N  +  IA  + KT AQV LRW ++ G  VVV
Sbjct:  168 QIELHPLLNQDELRKANAQHTVVTQSYCPL-ALG------RLLDNPTVTSIASEYVKTPAQVLLRWNLQLGNAVVV 236          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y2993_MYCBP (Uncharacterized oxidoreductase BCG_2993 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_2993 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.572e-19
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G AIA +       +RE+LF+T+KL   +    R   A + SL  L ++Y+DLYLIHWP  A P  +                  Y   W  M +S+  G  +SIG+SNF+ + I+ ++    + P++NQ+ L
Sbjct:   58 GNEAAVGRAIAAS-----GVAREELFVTTKLATPDQGFTRSQEACRASLDRLGLDYVDLYLIHWP--APPVGK------------------YVDAWGGMIQSRGEGHARSIGVSNFTAEHIENLIDLTFVTPAVNQIEL 171          

HSP 2 Score: 40.817 bits (94), Expect = 5.572e-19
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVV 723
            ++E+HP+  Q +LR+      +   +Y PL A+G      ++++N  +  IA  + KT AQV LRW ++ G  VVV
Sbjct:  168 QIELHPLLNQDELRKANAQHTVVTQSYCPL-ALG------RLLDNPTVTSIASEYVKTPAQVLLRWNLQLGNAVVV 236          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y1984_MYCSK (Uncharacterized oxidoreductase Mkms_1984 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1984 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.572e-19
Identity = 38/139 (27.34%), Postives = 67/139 (48.20%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G A+  +   G+   RE++++T+KL   +        A + SL  L ++Y+DLYLIHWP                          Y   W  + ++++ G+ +SIG+ NF+ + +  I+  +   P+INQ+ L
Sbjct:   59 GNEAAVGRAVNAS---GI--PREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIHWPAGDHGK--------------------YIDSWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIEL 172          

HSP 2 Score: 55.4546 bits (132), Expect = 5.572e-19
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVV 720
            ++E+HP+  Q +LRE     G+   AY PLG         +++++ A+  +A+AHGKT AQV LRW ++ G  V+
Sbjct:  169 QIELHPLLNQAELREVNAGYGIVTEAYGPLGV-------GRLLDHAAVTGVAQAHGKTPAQVLLRWSIQLGNVVI 236          
BLAST of FC930019 vs. ExPASy Swiss-Prot
Match: Y1938_MYCSS (Uncharacterized oxidoreductase Mmcs_1938 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_1938 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.572e-19
Identity = 38/139 (27.34%), Postives = 67/139 (48.20%), Query Frame = 3
Query:    3 GTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVSL 419
            G E A+G A+  +   G+   RE++++T+KL   +        A + SL  L ++Y+DLYLIHWP                          Y   W  + ++++ G+ +SIG+ NF+ + +  I+  +   P+INQ+ L
Sbjct:   59 GNEAAVGRAVNAS---GI--PREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIHWPAGDHGK--------------------YIDSWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIEL 172          

HSP 2 Score: 55.4546 bits (132), Expect = 5.572e-19
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  496 KVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVV 720
            ++E+HP+  Q +LRE     G+   AY PLG         +++++ A+  +A+AHGKT AQV LRW ++ G  V+
Sbjct:  169 QIELHPLLNQAELREVNAGYGIVTEAYGPLGV-------GRLLDHAAVTGVAQAHGKTPAQVLLRWSIQLGNVVI 236          
The following BLAST results are available for this feature:
BLAST of FC930019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
YBN4_SCHPO1.041e-1938.61Uncharacterized oxidoreductase C8E4.04 OS=Schizosa... [more]
Y2407_MYCS21.152e-1929.50Uncharacterized oxidoreductase MSMEG_2407 OS=Mycob... [more]
YOF5_CAEEL4.270e-1932.41Uncharacterized oxidoreductase ZK1290.5 OS=Caenorh... [more]
Y2999_MYCTA4.285e-1933.09Uncharacterized oxidoreductase MRA_2999 OS=Mycobac... [more]
Y2971_MYCTU4.285e-1933.09Uncharacterized oxidoreductase Rv2971/MT3049 OS=My... [more]
YDG7_SCHPO5.166e-1935.59Uncharacterized oxidoreductase C26F1.07 OS=Schizos... [more]
Y2996_MYCBO5.572e-1933.09Uncharacterized oxidoreductase Mb2996 OS=Mycobacte... [more]
Y2993_MYCBP5.572e-1933.09Uncharacterized oxidoreductase BCG_2993 OS=Mycobac... [more]
Y1984_MYCSK5.572e-1927.34Uncharacterized oxidoreductase Mkms_1984 OS=Mycoba... [more]
Y1938_MYCSS5.572e-1927.34Uncharacterized oxidoreductase Mmcs_1938 OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC34002H08EF PostHarvC1 Citrus clementina cDNA clone C34002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930019 ID=FC930019; Name=FC930019; organism=Citrus clementina; type=EST; length=724bp
ACGGAACCGAGAAGGCTCTGGGAGAAGCAATAGCCGAAGCACTCAGGCTT
GGCCTCGTCACTTCCCGTGAACAACTCTTCATCACTTCCAAGCTCTGGTG
CCACAACGCTCATCACGACCGCGTTATCCCGGCAATAAAGAAGTCTCTCA
GTGCGCTTCAAATGGAATATTTAGACCTCTACCTCATTCACTGGCCCATC
AGTGCTAAGCCAACATCAGAGGAGGAAGAGGTTGGAATGTCTCTGCCTAA
TAAAGAGGACCTTTCACCTTTGGACTACAAGGGCGTGTGGGAAGCCATGG
AAGAATCTCAAAGGCTCGGCCTCACTAAGTCCATTGGTCTCAGCAACTTC
TCTTGCAAGAAGATTGACACTATACTCACCTTCGCTACCATCCCTCCTTC
CATCAATCAGGTGAGCTTGCCACAAACTATGTTTGTACGAACTCATATGA
CATAATATGATTGGTTGAATGAAAGCAACACGTATTTCTTTTTTGAAGGT
GGAGATGCACCCTGTCTGGCAACAAAGGAAGCTTAGAGAATTTTGCAAGG
TCAAGGGCATGAATGTCACGGCGTACTCACCTTTGGGAGCCGTAGGGACA
AGATGGGGAAGCAATCAAGTCATGGAGAATGAAGCACTAAAGCAGATTGC
AGAGGCTCATGGCAAGACTGTCGCTCAGGTTTCTCTTAGATGGATAGTTG
AGCAAGGAGTGACAGTTGTTGTCA
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