FC930021

Overview
NameFC930021
Unique NameFC930021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 72/147 (48.98%), Postives = 96/147 (65.31%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            F +I DNGGIDTE+ YPY+AID SC  + K     T   + D+P  DEK + +AVA   PVSVAI+    +FQ Y  G++   +C   +LDHGV  VG+GT E+G DYW+VKNSWG++WG+ G+I+M RN       +CGIA  +SY
Sbjct:  227 FRYIKDNGGIDTEKSYPYEAIDDSCH-FNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN----KENQCGIASASSY 368          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            F++IIDN GID+E  YPYKA+DG C    KN +  T   Y ++P   E+AL++AVAN+ PVSV I+    +F LY++G++    C  +++HGV  VGYG  +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  189 FQYIIDNNGIDSEASYPYKAMDGKCQYDVKN-RAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSG----NHCGIANYPSY 328          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 65/136 (47.79%), Postives = 84/136 (61.76%), Query Frame = 2
Query:    5 EFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 412
            +++ DNGG+ TE++YPY+   G C    K    V I  Y+ VP NDE +L + + NQPVSV  E  G AFQLY+ GIF G CG   DH VTA+GYG     D    KNSWG +WGE GYI+++R  +G   G CG+
Sbjct:   73 QYVADNGGVHTEKEYPYEKKQGKCRAKEKKGTKVQITGYKRVPANDEISLIQGIGNQPVSVLHESKGRAFQLYKGGIFNGPCGYKNDHAVTAIGYGKAQLLD----KNSWGPNWGEKGYIKIKR-ASGKSEGTCGV 203          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 65/136 (47.79%), Postives = 87/136 (63.97%), Query Frame = 2
Query:    5 EFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 412
            ++++DNG + TE +YPY+   G C    K    V I  Y+ VP NDE +L +A+ANQPVSV  +  G  FQ Y+ GI+ G CGT+ DH VTAVGY    G  Y ++KNSWG +WGE GYIR++R  +G   G CG+
Sbjct:   73 QYVVDNG-VHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGY----GKTYLLLKNSWGPNWGEKGYIRIKR-ASGRSKGTCGV 202          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 71/146 (48.63%), Postives = 88/146 (60.27%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            F+++ DNGGID+EE YPY A D     Y+          + D+P   E+AL KAVA+  PVSVAI+ G  +FQ Y+SGI+    C +  LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASY
Sbjct:   74 FQYVQDNGGIDSEESYPYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASY 215          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.616e-30
Identity = 69/145 (47.59%), Postives = 91/145 (62.76%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            F++IIDNGGI+ +  YPYKA D  C    KN +  T   Y  +P  DE AL++AVA + PVSV I+    +F  Y+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  198 FQYIIDNGGIEADASYPYKATDEKCHYNSKN-RAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSY 337          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 74/164 (45.12%), Postives = 94/164 (57.32%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTENGA-------------------DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            FE+II+N GIDTE  YPYKA +G C+ Y+      T+  Y+ V    E +L+ AV   PVSVAI+    +FQLY SGI+    C + +LDHGV AVGYG+ +G+                   +YWIVKNSWG+SWG  GYI M RN        CGIA  AS+
Sbjct:  183 FEYIINNNGIDTESSYPYKAENGKCE-YKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRN----RDNNCGIASSASF 341          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 69/146 (47.26%), Postives = 90/146 (61.64%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            F++I  N GIDTE  YPY+A DGSC  +  N+   T   + ++    E  LQ+AV +  P+SV I+    +FQ Y SG++    C  S LDH V AVGYG+E G D+W+VKNSW +SWG+AGYI+M RN        CGIA  ASY
Sbjct:  180 FDYIKANNGIDTEAAYPYEARDGSC-RFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRN----RNNNCGIATVASY 320          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = 2
Query:    2 FEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            F++IIDN GID+E  YPYKA D  C  Y    +  T   Y ++P   E  L++AVAN+ PV V ++    +F LY SG++    C   ++HGV  +GYG  NG +YW+VKNSWGS++GE GYIRM RN        CGIA   SY
Sbjct:  188 FQYIIDNKGIDSEASYPYKATDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKG----NHCGIASYPSY 327          
BLAST of FC930021 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 65/142 (45.77%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    5 EFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 430
            E++  NG I     YPYKA  G+C   +    +V       V  N+E  L  A+A QPVSV +E  G  FQLY+ GIF G CGT +DH VTAVGYG   G  Y ++KNSWG++WGE GYIR++R   G   G CG+   + Y
Sbjct:  205 EYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYY 344          
The following BLAST results are available for this feature:
BLAST of FC930021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
CATL_DROME3.271e-3148.98Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATS_BOVIN4.272e-3148.28Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
MEX2_JACME9.517e-3147.79Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
MEX1_JACME2.120e-3047.79Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATL1_CHICK2.120e-3048.63Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATS_MOUSE3.616e-3047.59Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CYSP5_DICDI6.169e-3045.12Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CYSP2_HOMAM1.374e-2947.26Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATS_SAIBB1.374e-2946.21Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
PAPA3_CARPA1.795e-2945.77Caricain OS=Carica papaya PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34002H10EF PostHarvC1 Citrus clementina cDNA clone C34002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930021 ID=FC930021; Name=FC930021; organism=Citrus clementina; type=EST; length=699bp
ATTCGAGTTCATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACC
CCTACAAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAA
GTAGTTACAATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGC
TTTGCAAAAGGCAGTTGCAAATCAACCCGTGAGTGTTGCCATTGAAGGAG
GTGGCATGGCATTCCAGTTATATGAATCGGGTATATTTACGGGAAGATGT
GGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAA
TGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAG
AGGCTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGC
AAGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAA
TCCTCCCAACCCTGGACCGTCCCCTCCATCTCCAACAAAGCCTCCTGCTG
TGTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTC
TTTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAGGC
TGCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCCCA
TCTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACACCCATTG
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