FC930023

Overview
NameFC930023
Unique NameFC930023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930023 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 86/211 (40.76%), Postives = 119/211 (56.40%), Query Frame = 2
Query:   68 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKALLLPSDPYQRAQARFWVDFIDKKMYDSLRKT-WTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNV--EAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSA 691
            +V LL    S F  RV+IAL  KGV+Y++ EE+L NKS LLL+ NPVHKK+PV +HN +P  ES +IV+YIDE WK+   +LPSDPYQRA ARFW  FID K+  ++ K+ +T                L+ LE +L DK FFGG+ FG VD++ +    W   ++      +    + P    W +  L    V + LP    +F +  A
Sbjct:    7 DVKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNP-ILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKA 216          
BLAST of FC930023 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 95/238 (39.92%), Postives = 127/238 (53.36%), Query Frame = 2
Query:   62 ANEVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKA----LLLPSDPYQRAQARFWVDFIDKKMYDSLRKTW------TTKGXXXXXXXXXXXXVLKTLEGQLGD----KPFFGGDNFGYVDLSLIPFYCWFYTYE-TCGKFNVE-AECPKFIAWVKRCLQRETVAKALP-DGKKVFEFVSAMRTI*DWSREK 724
            + E+ LL  W S + IRVR+ L  K + YEY EE+L +KS LLL  NPVHK +PVL+H GRP  ES +IVQYIDEVW   A     ++PSDPY+RA ARFW  ++D    D +R  W      +                L+TLEG  G+    KPFFGGD  G+VD+ L  +  WF   +   G+  ++ A  P   AW +R    +     +P D  K+ EF    +T+  WS  K
Sbjct:    4 SGELKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVD----DKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF---RQTLLRWSASK 234          
BLAST of FC930023 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 2
Query:   68 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKALLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL 523
            EV LL    S F  RV  AL  KGVKYE+ EEDL+NKSPLLLQ NP+HKKIPVLIHNG+  CES +I++YIDE ++  + +LP DPY RA ARFW  +++ K   ++ K++ +KG            +LK L+ +  DK  F GD FG+ D+
Sbjct:    3 EVKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPS-ILPKDPYDRALARFWAKYVEDK-GAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADI 152          
BLAST of FC930023 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 85/217 (39.17%), Postives = 125/217 (57.60%), Query Frame = 2
Query:   68 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKALLLPSDPYQRAQARFWVDFIDKKM----YDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL---SLIPFYCWFYTYETCG-KFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAM 694
            EV LL  W S F  RV +AL  KG+ YEY EE L+NKSPLLL +NP+HKK+PVL+HNG+   ES +I++YIDE W     +LP DPY+R++ARF+   +D+++    + S+ +    KG            ++  LE +L  K +FGG   G++D    SLIPF C    +E  G +   E + P+F  WV+   + E V   +P  ++  E ++ M
Sbjct:    6 EVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQNP-ILPQDPYERSKARFFAKLVDEQIMNVGFISMARA-DEKG--REVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPF-CLERGWEGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMNYM 217          
BLAST of FC930023 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 73/216 (33.80%), Postives = 105/216 (48.61%), Query Frame = 2
Query:   95 SMFGIRVRIALAEKGVKYEYKEEDL-KNKSPLLLQMNPVHKKIPVLI-HNGRPFCESPIIVQYIDEVWKDK------ALLLPSDPYQRAQARFWVDFIDKKMYD-----SLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNF--GYVDLSLIPFYCWFYTYETCGKFN----VEAEC-PKFIAWVKRCLQRETVAKALPDGKKVFEF 682
            S F  R R+AL  +GV YE  +E L   KS  LL  NPV+ KIPVL+  +GR  CES +IVQYI++V ++       +LLLP DPY+RA  RFW  FID K +      SL  T   +             + +  + +   + FF G +   G +DL+L    C+      C + +    ++A   P    W +R        + LPD +KV +F
Sbjct:    9 SPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLAL---GCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221          
The following BLAST results are available for this feature:
BLAST of FC930023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX6_SOYBN3.646e-3640.76Probable glutathione S-transferase OS=Glycine max ... [more]
GSTU6_ORYSJ3.646e-3639.92Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX1_SOLTU1.098e-3249.34Probable glutathione S-transferase OS=Solanum tube... [more]
GSTXA_ARATH1.872e-3239.17Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX2_MAIZE6.247e-2033.80Probable glutathione S-transferase BZ2 OS=Zea mays... [more]

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Properties
Property NameValue
Genbank descriptionC34003A01EF PostHarvC1 Citrus clementina cDNA clone C34003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930023 ID=FC930023; Name=FC930023; organism=Citrus clementina; type=EST; length=731bp
GGTGTTTGTCTTGTCTTTTCATTTATTCACTCTTGACTCTTAGTAAGCTT
CTGTCACAATGGCGAACGAAGTGGTTCTGTTGGATTTCTGGCCCAGCATG
TTTGGGATAAGGGTCAGGATTGCTCTGGCGGAGAAAGGCGTCAAGTATGA
GTACAAGGAAGAGGACTTGAAGAACAAGAGCCCCCTGCTTCTGCAGATGA
ACCCCGTTCACAAGAAGATCCCGGTTCTCATCCACAACGGCAGACCGTTC
TGTGAGTCACCCATCATTGTTCAGTACATTGATGAAGTGTGGAAGGACAA
GGCTCTATTGCTTCCCTCTGATCCCTACCAGAGAGCTCAAGCTAGGTTCT
GGGTAGATTTCATTGACAAGAAGATGTACGATTCTTTGAGGAAGACATGG
ACCACAAAGGGAGAAGAGCAGGAGGCAGCTAAGAAGGAGTTCTTTGAAGT
TCTGAAGACTTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTTCGGAGGAG
ACAATTTTGGGTATGTGGATTTAAGTTTGATCCCATTCTATTGTTGGTTT
TACACGTATGAGACATGTGGAAAGTTCAACGTCGAGGCTGAGTGCCCCAA
GTTCATAGCTTGGGTGAAGAGATGCTTGCAGAGGGAGACTGTTGCCAAGG
CACTTCCTGATGGGAAGAAAGTGTTTGAATTTGTTTCAGCGATGAGGACA
ATTTAGGATTGGAGTAGAGAGAAAAAGGACA
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