FC930028

Overview
NameFC930028
Unique NameFC930028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.935e-53
Identity = 99/173 (57.23%), Postives = 127/173 (73.41%), Query Frame = 1
Query:  154 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE 666
            V  RGGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD  GP L++++PHGS   LPF  +GSG  AA+A+ E
Sbjct:    6 VEHRGGFSFENCQRNASLEHVLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLE 178          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.938e-52
Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 1
Query:  154 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE 666
            V   GGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+LV+GGVD  GP L+ ++PHGS   LPF  +GSG  AA+A+ E
Sbjct:    6 VEPTGGFSFENCQRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLE 178          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.143e-52
Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  169 GFSFDLCRRNDML--AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE 666
            GFSF+ C RN  L  A  G+ +P  RKTGTTI GL+FQDGVILGADTRAT   +V DK CEKIH++AP IYCCGAG AAD E  T M +S ++LH   TGRE RV T   +L++ LF YQGYV A+L++GGVD TGP L++++PHGS   LPF  +GSG  AA+A+ E
Sbjct:   11 GFSFENCERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLE 178          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.686e-50
Identity = 94/171 (54.97%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  169 GFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 681
            G SFD  +RN+ LA+     P    TGTTIVG+ F +GV++ ADTR+T+GPIV DKNC K+H ++P I+C GAGTAADTEAVT ++ S ++LH  +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD   + ++GSGSLAAMA+ ES+ ++
Sbjct:    3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 173          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  241 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRKPD*DE 696
            KTGTTIVG+ ++ GVIL ADTR+T+GP+V DKNC KIH +   I CCGAGTAAD   V  M S +L+L +    R   V     +  +HL  Y G + AAL++GG+D  G HL+ I+PHGS ++  F ++GSGSL A+A  ES  R  D DE
Sbjct:    4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVARMASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLESRYRAMDKDE 155          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.365e-19
Identity = 52/148 (35.14%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  241 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 681
            + GTTI  L ++DGVIL AD+R T G  + ++  +K+  +  NI+CC +G+AADT+ V D++   L ++R   G +  V TA TL  +  +  +  + A L++ G D  TG  +++I   GS    P A  GSGS       ++N R+
Sbjct:   22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRE 169          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 50/147 (34.01%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  241 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 681
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       ++  RK
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRK 162          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18
Identity = 50/147 (34.01%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  241 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 681
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       ++  RK
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRK 162          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  220 VNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE 666
            +NL +    GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  +  L++   +N +  +Q  L++GG D   G  ++ I   G+    PFA  GSGS      F+
Sbjct:    3 LNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFD 152          
BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17
Identity = 49/141 (34.75%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  247 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE 666
            GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  A  L +   +N +  +Q  +++GG D   G  ++ I P G+    PFA  GSGS      F+
Sbjct:   13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFD 153          
The following BLAST results are available for this feature:
BLAST of FC930028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB10_RAT7.935e-5357.23Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_MOUSE3.938e-5257.23Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN5.143e-5258.93Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB7_YEAST3.686e-5054.97Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB7_ENCCU9.745e-3550.00Probable proteasome subunit beta type-7 OS=Encepha... [more]
PSB6_SCHPO3.365e-1935.14Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB9_SALSA9.790e-1934.01Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY1.670e-1834.01Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB6_ARATH1.414e-1733.33Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_TOBAC2.411e-1734.75Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]

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Properties
Property NameValue
Genbank descriptionC34003A06EF PostHarvC1 Citrus clementina cDNA clone C34003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930028 ID=FC930028; Name=FC930028; organism=Citrus clementina; type=EST; length=764bp
GGATCCTTTCTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTC
GCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAG
TGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATA
GATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGA
TATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGA
CGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGAT
ACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAAT
TCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTG
ACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGT
TATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAA
GAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTG
GTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGT
TCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGC
CATGGCTATGTTTGAATCAAATACAAGAAAGCCTGACTAAGATGAGGGAT
ACAGCTAGTTGTGGACGCATTTGCTCTGGTATATCATGACTTGGGAGTGG
AGCATGCTGATGTC
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