FC930028

Overview
NameFC930028
Unique NameFC930028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930028 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 1 
Query:  247 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFES 669
            GTT VGLI  D VIL  D RA+ G +V DK  +K++ +   I    AG+  D +A+  ++ ++ +L++  TGR    +   TLL   L + + +     +++GG D   G  L ++ P  G  +   F   GSGS  A  + E+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEA 149
The following BLAST results are available for this feature:
BLAST of FC930028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSMB_METJA2.582e-1131.94Proteasome subunit beta OS=Methanocaldococcus jann... [more]

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Properties
Property NameValue
Genbank descriptionC34003A06EF PostHarvC1 Citrus clementina cDNA clone C34003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930028 ID=FC930028; Name=FC930028; organism=Citrus clementina; type=EST; length=764bp
GGATCCTTTCTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTC
GCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAG
TGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATA
GATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGA
TATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGA
CGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGAT
ACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAAT
TCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTG
ACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGT
TATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAA
GAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTG
GTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGT
TCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGC
CATGGCTATGTTTGAATCAAATACAAGAAAGCCTGACTAAGATGAGGGAT
ACAGCTAGTTGTGGACGCATTTGCTCTGGTATATCATGACTTGGGAGTGG
AGCATGCTGATGTC
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