FC930029

Overview
NameFC930029
Unique NameFC930029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.846e-57
Identity = 118/204 (57.84%), Postives = 143/204 (70.10%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRMQKRAENCQ 722
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV  D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRL TP  LQ KR R+  + +  Q
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQ 200          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.409e-56
Identity = 116/204 (56.86%), Postives = 143/204 (70.10%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRMQKRAENCQ 722
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  D LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRL TP  LQ KR R+  + +  Q
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCY--RPRRTGERKRKSVRGCIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQ 200          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.147e-56
Identity = 116/204 (56.86%), Postives = 142/204 (69.61%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRMQKRAENCQ 722
            MK NI+ P TGCQK +E++D++KLR F++KR++ EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRL TP  LQ KR R+  + +  Q
Sbjct:    1 MKLNISFPATGCQKLIEVEDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQ 200          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.196e-55
Identity = 115/194 (59.28%), Postives = 139/194 (71.65%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLGTPLTLQRKR 689
            MK NI+ P TGCQK +E+DD++KLR F++KR+S ++  ++LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL TP  LQRKR
Sbjct:    1 MKINISYPATGCQKLIEVDDERKLRPFYEKRMSHQMTAESLGDEWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCY--RPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKR 190          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.012e-54
Identity = 116/205 (56.59%), Postives = 136/205 (66.34%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRMQKRAENCQA 725
            MK NI+ P  G QK  EIDD+ ++R FFDKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRL TP  LQRKR +   +  N QA
Sbjct:    1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCY--RPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQA 200          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.012e-54
Identity = 115/197 (58.38%), Postives = 136/197 (69.04%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLGTPLTLQRKRGRM 698
            MK N++ P TGCQK  E++D+ KLR F++K + Q V  D LG+E+KGY+ +I GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL TP+ LQRKR R+
Sbjct:    1 MKLNVSYPATGCQKLFEVNDEHKLRVFYEKHMGQVVEADILGDEWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRI 193          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.255e-54
Identity = 114/197 (57.87%), Postives = 136/197 (69.04%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLGTPLTLQRKRGRM 698
            MK N++ P TGCQK  E+ D+ KLR F++KR+ Q V  D LG+E+KGY  +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL TP+ LQRK  R+
Sbjct:    1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRI 193          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.255e-54
Identity = 114/197 (57.87%), Postives = 136/197 (69.04%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLGTPLTLQRKRGRM 698
            MK N++ P TG QK  E+ DD KLR F+DKR+  E+  D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL TP+ LQRKR R+
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRL 193          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.024e-54
Identity = 116/196 (59.18%), Postives = 133/196 (67.86%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLGTPLTLQRKRGR 695
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L IVK+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRL TP TLQ KR R
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHR 193          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54
Identity = 115/196 (58.67%), Postives = 133/196 (67.86%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLGTPLTLQRKRGR 695
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L I+K+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRL TP TLQ KR R
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHR 193          
The following BLAST results are available for this feature:
BLAST of FC930029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_CHICK2.846e-5757.8440S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ONCMY2.409e-5656.8640S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_XENLA3.147e-5656.8640S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_BRAFL1.196e-5559.2840S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_YEAST1.012e-5456.5940S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_GLOMM1.012e-5458.3840S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_DROME2.255e-5457.8740S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_AEDAE2.255e-5457.8740S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6B_SCHPO5.024e-5459.1840S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]
RS6A_SCHPO6.562e-5458.6740S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC34003A07EF PostHarvC1 Citrus clementina cDNA clone C34003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930029 ID=FC930029; Name=FC930029; organism=Citrus clementina; type=EST; length=728bp
GAAATAAGTTTTGGATCCCCCAAAACCCTAATCCTCAGAGAAGGAGTCGG
AGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTAGCCACAGACTCTAT
CGAACAAAAGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGA
AGAAGCTCGAAATTGACGATGACCAGAAACTTCGAGCATTTTTTGACAAG
AGGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGG
ATATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGA
AGCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGT
ACCCCTTGCTTCCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAA
GTCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGG
TCATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAA
AAGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTT
CAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTA
GGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATT
CAGAGGTTGGGTACTCCTTTGACTCTGCAAAGGAAGCGTGGCAGAATGCA
GAAAAGAGCAGAGAATTGCCAGGCCACG
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