FC930029

Overview
NameFC930029
Unique NameFC930029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.790e-51
Identity = 109/151 (72.19%), Postives = 115/151 (76.16%), Query Frame = 3
Query:  246 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRM 698
            KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRL TPLTLQRKR R+
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLTLQRKRARI 146          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.044e-47
Identity = 104/200 (52.00%), Postives = 126/200 (63.00%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRMQKRA 710
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRL TP T+ R++    K+A
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKA 197          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.787e-39
Identity = 96/207 (46.38%), Postives = 121/207 (58.45%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLGTPLTLQRKRGRMQKRAENCQA 725
            MK NIA P  G  K+ EI D+   R    D R+  EV+G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL TP    R + R  K+A++  A
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIA 200          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.047e-38
Identity = 95/207 (45.89%), Postives = 120/207 (57.97%), Query Frame = 3
Query:  111 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLGTPLTLQRKRGRMQKRAENCQA 725
            M  NIA P  G  K+ EI D+   R    D R+  EV+G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL TP    R + R  K+A++  A
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIA 200          
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 3
Query:  159 EIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKR 689
            EI+   ++R  +DK+I  + +G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  E+   K V  Y R           K PKI+  G  +  +++R
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQER 173          
The following BLAST results are available for this feature:
BLAST of FC930029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_TOBAC6.790e-5172.1940S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_DICDI2.044e-4752.0040S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA7.787e-3946.3840S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN5.047e-3845.8940S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU3.401e-1833.9040S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003A07EF PostHarvC1 Citrus clementina cDNA clone C34003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930029 ID=FC930029; Name=FC930029; organism=Citrus clementina; type=EST; length=728bp
GAAATAAGTTTTGGATCCCCCAAAACCCTAATCCTCAGAGAAGGAGTCGG
AGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTAGCCACAGACTCTAT
CGAACAAAAGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGA
AGAAGCTCGAAATTGACGATGACCAGAAACTTCGAGCATTTTTTGACAAG
AGGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGG
ATATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGA
AGCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGT
ACCCCTTGCTTCCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAA
GTCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGG
TCATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAA
AAGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTT
CAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTA
GGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATT
CAGAGGTTGGGTACTCCTTTGACTCTGCAAAGGAAGCGTGGCAGAATGCA
GAAAAGAGCAGAGAATTGCCAGGCCACG
back to top