FC930029
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 6.790e-51 Identity = 109/151 (72.19%), Postives = 115/151 (76.16%), Query Frame = 3 Query: 246 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRM 698 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCF CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+ + L+ KEDDVRKYVNT FTTK K SKAPKIQRL TPLTLQRKR R+ Sbjct: 1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLTLQRKRARI 146
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.044e-47 Identity = 104/200 (52.00%), Postives = 126/200 (63.00%), Query Frame = 3 Query: 111 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKRGRMQKRA 710 MK NIA P G QKK+ I+D K+R F +KRI QEV LG+EFKGYVFKI GG D +GFPM QGV P RVRLLL + CF CIV+ D++ L L+IVKKG+ ++PGLTD P +GPKRAS IRKLF LSK++DVR +V R T K SKAPKIQRL TP T+ R++ K+A Sbjct: 1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKA 197
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.787e-39 Identity = 96/207 (46.38%), Postives = 121/207 (58.45%), Query Frame = 3 Query: 111 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLGTPLTLQRKRGRMQKRAENCQA 725 MK NIA P G K+ EI D+ R D R+ EV+G G EFKGY+F++ GG DK GFPM GVL RV LL+ RG F C+++ D++++N+ I K G+ + G+TDT PR GPKRASKIRKLFNLS+ +DVRKYV R KSGKK KAPKIQRL TP R + R K+A++ A Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIA 200
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.047e-38 Identity = 95/207 (45.89%), Postives = 120/207 (57.97%), Query Frame = 3 Query: 111 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLGTPLTLQRKRGRMQKRAENCQA 725 M NIA P G K+ EI D+ R D R+ EV+G G EFKGY+F++ GG DK GFPM GVL RV LL+ RG F C+++ D++++N+ I K G+ + G+TDT PR GPKRASKIRKLFNLS+ +DVRKYV R KSGKK KAPKIQRL TP R + R K+A++ A Sbjct: 1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIA 200
BLAST of FC930029 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18 Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 3 Query: 159 EIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLGTPLTLQRKR 689 EI+ ++R +DK+I + +G LGEEF+G + +I GG D QGFPM G LT RVR LL +G + IVS ++ VLNL+I++ GE ++ GLT+ P++ K+RK+F + E+ K V Y R K PKI+ G + +++R Sbjct: 3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQER 173 The following BLAST results are available for this feature:
BLAST of FC930029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930029 ID=FC930029; Name=FC930029; organism=Citrus clementina; type=EST; length=728bpback to top |