FC930030

Overview
NameFC930030
Unique NameFC930030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930030_ssr147 microsatellite FC930030_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig968 contig Ccv1_Contig968:316..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSS 712
            REPR    T S+VD L+DGYRWRKYGQK VK +P PRSYY+CT+  C V+K VER+  D   V+TTYEG+HNH  P     + GG   +GNG  G S
Sbjct:  471 REPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDSGNGNSGGS 567          

HSP 2 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            EDGY WRKYGQK VK S +PRSYY+CT+ +C VKK+VERS  +  I    Y+G HNH  P
Sbjct:  273 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERS-REGHITEIIYKGAHNHLKP 331          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHP 643
            ++ R+AF T+S+VD L+DGYRWRKYGQKAVK++ FPRSYYRCT   CNVKK+V+R   D  +VVTTYEG H+HP
Sbjct:   51 KKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHP 124          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  416 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHP 643
            + + PRF+F TKS+ D L+DGYRWRKYGQK+VK+S +PRSYYRCT   CNVKK+V+R   + SIV TTYEG HNHP
Sbjct:   12 KMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIVETTYEGIHNHP 87          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH 640
            REPRF F TKS+VD L+DGY+WRKYGQK VK+S  PRSYYRCT  +C VKKRVER   D  +V+TTYEG+HNH
Sbjct:  129 REPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH 640
            REPRF F T SEVD L+DGYRWRKYGQK VK++  PRSYYRCT   C VKKRVER   DP +V+TTYEG+H H
Sbjct:  207 REPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  425 EPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            EP+    TKSEVD L+DGYRWRKYGQK VK +P PRSYY+CT+ +C V+K VER+ TD   V+TTYEG+HNH  P
Sbjct:  291 EPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365          

HSP 2 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            +DGY WRKYGQK +K   +PRSYY+CT  +C VKK+VERS +D  I    Y+GQH+H  P
Sbjct:  167 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERS-SDGQITQIIYKGQHDHERP 225          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 2
Query:  419 QREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHP 643
            ++ PR AF T+S+ D L+DGYRWRKYGQK+VK +  PRSYYRCT  +CNVKK+V+R   DP++VVTTYEG HNHP
Sbjct:   81 RKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 155          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 2
Query:  431 RFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHP 643
            R AF T+S+ D L+DGYRWRKYGQK+VK++  PRSYYRCT  +CNVKK+V+R   DP++VVTTYEG HNHP
Sbjct:  101 RIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 171          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGV 679
            +EPR    T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER++ DP  V+TTYEG+H H    +P P  G V
Sbjct:  218 KEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQ---IPTPRRGPV 300          

HSP 2 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            +DGY WRKYGQK VK S  PRSY++CT  +C  KK+VE S     ++   Y+G HNHP P
Sbjct:  117 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPKP 176          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            REPR    T SEVD L+DGYRWRKYGQK V+ +P PRSYY+CT+  C V+K VER+  DP  V+TTYEG+H+H  P
Sbjct:  365 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVP 440          

HSP 2 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGV 679
            +DGY WRKYGQK VK S FPRSYY+CT  +C VKK  ERS+ D  I    Y+G H+HP P   R   GG+
Sbjct:  211 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPKPQPGRRNSGGM 279          
The following BLAST results are available for this feature:
BLAST of FC930030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
WRKY2_ARATH3.664e-2555.67Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK75_ARATH8.163e-2566.22Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK43_ARATH1.066e-2465.79Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK12_ARATH1.066e-2469.86Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK13_ARATH1.818e-2469.86Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK58_ARATH4.051e-2464.00Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK24_ARATH4.051e-2465.33Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK56_ARATH2.011e-2367.61Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK26_ARATH9.978e-2355.81Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK20_ARATH9.978e-2361.84Probable WRKY transcription factor 20 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34003A08EF PostHarvC1 Citrus clementina cDNA clone C34003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930030 ID=FC930030; Name=FC930030; organism=Citrus clementina; type=EST; length=720bp
ATAACAATATGGGATCATCACCATTTGCTGATCATCTTTCATTGGTTCTC
AGCTTCGAGGCGTATTTGACTTGTACGAGGGAGAGAAGGGGTCATTAGGG
TTTATGGAGTTACTGGGTGTTCAAGACTTTGGTTCTTCTTCTCCTCCTTC
TTCTTCTTTATTTGATATGGTACAGTTCCAGGCACAGAATCAGGTTCCGT
CTAAAGGAGCATCAGCATCTTCAACTGTCAATGTTACAAAGATTGAATGT
TCTGAGTTGTTGAATCAGCCGGCGACGCCTAACTCTTCCTCGATTTCATC
TGCATCGAGTGAGGCTTTGAATGATGAACAAGTTAAAGTAGAAGAGCATG
TACATGATGAACAAAATCAACAAAAAACCAAGAAACAGTTGAAGCCCAAG
AAGACAAATCAGAAACGACAGAGAGAGCCGAGATTCGCGTTCATGACAAA
GAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGGAAGTACGGTC
AGAAGGCCGTTAAGGACAGCCCCTTTCCTAGGAGTTACTATCGTTGCACC
AGTGCTTCATGTAATGTGAAGAAAAGAGTGGAGAGATCTTACACTGATCC
AAGCATTGTCGTGACGACCTACGAGGGCCAGCACAACCACCCGAGTCCAC
TCCTACCACGTCCAACCCTTGGCGGTGTTCCTCATGCTGGAAACGGTGTC
GTTGGATCCTCTTTTGGTAT
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