FC930030

Overview
NameFC930030
Unique NameFC930030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930030_ssr147 microsatellite FC930030_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig968 contig Ccv1_Contig968:316..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSAS-CNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            R+ R +   +SE   + DG +WRKYGQK  K +P PR+YYRCT A+ C V+K+V+R   D SI++TTYEG HNHP P
Sbjct:  296 RKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 372          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            R+ R +   +SE   L DG +WRKYGQK  K +P PR+YYRCT A  C V+K+V+R   D +I++TTYEG HNHP P
Sbjct:  276 RKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLP 352          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            R+ R +   +SE   + DG +WRKYGQK  K +P PR+YYRCT A  C V+K+V+R   D SI++TTYEG HNHP P
Sbjct:  281 RKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 357          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCT-SASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 652
            ++ R +  ++ E   + DG +WRKYGQK  K +P PR+YYRCT +ASC V+K+V+R   D SI+++TYEG HNHP P+
Sbjct:  175 KKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNHPLPM 252          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 652
            R+ R +   + E   + DG +WRKYGQK  K +P PR+YYRCT A  C V+K+V+R   D SI++TTYEG HNHP P+
Sbjct:  219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPV 296          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  467 LEDGYRWRKYGQKAVKDSPFPRSYYRCT-SASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            ++DGY+WRKYGQK  +D+P PR+Y+RC+ S SC VKK+V+RS  DPS +V TYEG HNH  P
Sbjct:  145 VKDGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHTGP 206          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  467 LEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            ++DG++WRKYGQK  +D+P PR+Y+RC+ A SC VKK+V+RS  DPS++V TYEG HNH  P
Sbjct:  175 VKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGP 236          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            R+ R +   +S+   + DG +WRKYGQK  K +P PR+YYRCT A  C V+K+V+R   D +I+ TTYEG HNHP P
Sbjct:  223 RKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLP 299          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 652
            ++ +F      +V    DGYRWRKYGQK VK +P PR+YYRCTSA C V+K +E +  +   V+ TY+G HNH  P+
Sbjct:  315 KKNKFVVHAAGDVGICGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPV 391          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 2
Query:  473 DGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGG 676
            D + WRKYGQK +K SP+PRSYYRC S+  C  +K+VERS TDP++ V TY  +HNHP P L R TL G
Sbjct: 1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFPTL-RNTLAG 1248          
The following BLAST results are available for this feature:
BLAST of FC930030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
WRKY6_ARATH7.400e-1853.25WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK42_ARATH1.262e-1753.25Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK31_ARATH1.262e-1753.25Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK61_ARATH2.812e-1750.00Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRKY9_ARATH3.673e-1751.28Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK60_ARATH3.673e-1761.29Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK18_ARATH8.182e-1759.68WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK47_ARATH1.069e-1650.65Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK32_ARATH1.069e-1648.05Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRK16_ARATH3.109e-1659.42Probable WRKY transcription factor 16 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34003A08EF PostHarvC1 Citrus clementina cDNA clone C34003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930030 ID=FC930030; Name=FC930030; organism=Citrus clementina; type=EST; length=720bp
ATAACAATATGGGATCATCACCATTTGCTGATCATCTTTCATTGGTTCTC
AGCTTCGAGGCGTATTTGACTTGTACGAGGGAGAGAAGGGGTCATTAGGG
TTTATGGAGTTACTGGGTGTTCAAGACTTTGGTTCTTCTTCTCCTCCTTC
TTCTTCTTTATTTGATATGGTACAGTTCCAGGCACAGAATCAGGTTCCGT
CTAAAGGAGCATCAGCATCTTCAACTGTCAATGTTACAAAGATTGAATGT
TCTGAGTTGTTGAATCAGCCGGCGACGCCTAACTCTTCCTCGATTTCATC
TGCATCGAGTGAGGCTTTGAATGATGAACAAGTTAAAGTAGAAGAGCATG
TACATGATGAACAAAATCAACAAAAAACCAAGAAACAGTTGAAGCCCAAG
AAGACAAATCAGAAACGACAGAGAGAGCCGAGATTCGCGTTCATGACAAA
GAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGGAAGTACGGTC
AGAAGGCCGTTAAGGACAGCCCCTTTCCTAGGAGTTACTATCGTTGCACC
AGTGCTTCATGTAATGTGAAGAAAAGAGTGGAGAGATCTTACACTGATCC
AAGCATTGTCGTGACGACCTACGAGGGCCAGCACAACCACCCGAGTCCAC
TCCTACCACGTCCAACCCTTGGCGGTGTTCCTCATGCTGGAAACGGTGTC
GTTGGATCCTCTTTTGGTAT
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