FC930030

Overview
NameFC930030
Unique NameFC930030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930030_ssr147 microsatellite FC930030_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig968 contig Ccv1_Contig968:316..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  473 DGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 652
            D + WRKYGQK +K SPFPR YYRC+S+  C+ +K+VERS TDP+++V TY  +HNHP P+
Sbjct:  218 DLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPI 278          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  470 EDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH 640
            +DGY+WRKYGQK++K+SP PRSYY+CT+  CN KK+VERS  + +  + TYEG H H
Sbjct:  114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  473 DGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            D + WRKYGQK +K SP+PR YYRC+S+  C+ +K+VERS TDP+++V TY  +HNHP P
Sbjct:  216 DLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWP 275          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  446 TKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            T S +DHL+DG+ WRKYGQK+VK SPFP+SY++C   +C VKK+V       S  + TY G+HNH  P
Sbjct: 1103 TGSSIDHLDDGFFWRKYGQKSVKGSPFPKSYFKCAELTCPVKKQV---IQQDSKYINTYRGKHNHDPP 1167          

HSP 2 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  467 LEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPR 661
            + DGY+WRKYGQK VK S  PR YY+CT   CNV+K+VER   D +   T Y+G+H H  P   R
Sbjct:  813 VSDGYQWRKYGQKNVKGSLHPRHYYKCTFQGCNVRKQVER-IGDTNQNSTVYKGEHCHGFPQTTR 876          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  449 KSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVP 682
            K +     D + WRKYGQK +K SP+PR YYRC+S   C  +K+VERS  DP++++ TY  +HNHP PL      G  P
Sbjct:   67 KGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSSTRNGPKP 145          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  422 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 652
            +  R     + +   + DG +WRKYGQK  K +P PR+YYRCT A  C V+K+V+R   D SI++TTYEG H+H  PL
Sbjct:  211 KRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPL 288          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  473 DGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            D + WRKYGQK +K SP+PR+YYRC+S+  C  +K+VERS  DP+I + TY G+H HP P
Sbjct:  166 DLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRP 225          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  419 QREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTS-ASCNVKKRVERSYTDPSIVVTTYEGQHNHP 643
            +R  R   ++    D   D Y WRKYGQK +K SP+PR YY+C+S   C  +K VER   DP++++ TYE +HNHP
Sbjct:  296 RRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHP 371          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  473 DGYRWRKYGQKAVKDSPFPRSYYRC-TSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            D + WRKYGQK +K SP+PR YYRC TS  C  +K+VER+ +DP + + TY  +HNHP+P
Sbjct:  129 DVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAP 188          
BLAST of FC930030 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.000e-14
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  446 TKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 649
            ++ EV    D + WRKYGQK +K SP+PR YYRC+S+  C  +K+VERS  DPS ++ TY   HNHP P
Sbjct:   62 SRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFP 130          
The following BLAST results are available for this feature:
BLAST of FC930030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
WRK14_ARATH3.109e-1659.02Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK49_ARATH9.046e-1659.65Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK35_ARATH1.181e-1558.33Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRKY1_DICDI1.543e-1552.94Probable WRKY transcription factor protein 1 OS=Di... [more]
WRK65_ARATH1.543e-1546.84Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK72_ARATH5.863e-1547.44Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK27_ARATH5.863e-1556.67Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK21_ARATH5.863e-1546.05Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK22_ARATH7.658e-1555.00WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK69_ARATH1.000e-1452.17Probable WRKY transcription factor 69 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34003A08EF PostHarvC1 Citrus clementina cDNA clone C34003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930030 ID=FC930030; Name=FC930030; organism=Citrus clementina; type=EST; length=720bp
ATAACAATATGGGATCATCACCATTTGCTGATCATCTTTCATTGGTTCTC
AGCTTCGAGGCGTATTTGACTTGTACGAGGGAGAGAAGGGGTCATTAGGG
TTTATGGAGTTACTGGGTGTTCAAGACTTTGGTTCTTCTTCTCCTCCTTC
TTCTTCTTTATTTGATATGGTACAGTTCCAGGCACAGAATCAGGTTCCGT
CTAAAGGAGCATCAGCATCTTCAACTGTCAATGTTACAAAGATTGAATGT
TCTGAGTTGTTGAATCAGCCGGCGACGCCTAACTCTTCCTCGATTTCATC
TGCATCGAGTGAGGCTTTGAATGATGAACAAGTTAAAGTAGAAGAGCATG
TACATGATGAACAAAATCAACAAAAAACCAAGAAACAGTTGAAGCCCAAG
AAGACAAATCAGAAACGACAGAGAGAGCCGAGATTCGCGTTCATGACAAA
GAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGGAAGTACGGTC
AGAAGGCCGTTAAGGACAGCCCCTTTCCTAGGAGTTACTATCGTTGCACC
AGTGCTTCATGTAATGTGAAGAAAAGAGTGGAGAGATCTTACACTGATCC
AAGCATTGTCGTGACGACCTACGAGGGCCAGCACAACCACCCGAGTCCAC
TCCTACCACGTCCAACCCTTGGCGGTGTTCCTCATGCTGGAAACGGTGTC
GTTGGATCCTCTTTTGGTAT
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