FC930040

Overview
NameFC930040
Unique NameFC930040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10285 contig Ccv1_Contig10285:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930040 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.674e-36
Identity = 91/210 (43.33%), Postives = 118/210 (56.19%), Query Frame = 1
Query:   70 EVVLSDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDRKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYET-CGKFNVEAE-CPKFIAWVKRCLQRETVAQALPDGKKVFEFVSA 693
            EV L  FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NPVHKK+PVLIHNG+P  ES +I++YIDE ++  + +LP DPY RA ARFW  F+  K+  ++  T+  KG            +LK L+ +L DK FF GD FG+ D++      W   +E   G   V +E  P F  W    +    V ++LP   ++  F  A
Sbjct:    3 EVKLLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWSKFLGDKV-AAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAFFRA 210          
BLAST of FC930040 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.928e-35
Identity = 90/224 (40.18%), Postives = 120/224 (53.57%), Query Frame = 1
Query:   64 ANEVVLSDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKA----PLLPSDPYQRAQARFWVDFIDRKMYDSLRKTW------TTKGXXXXXXXXXXXXVLKTLEGQLGD----KPFFGGDNFGYVDLSLIPFYCWFYTYE-TCGKFNVE-AECPKFIAWVKRCLQRETVAQALP-DGKKVFEF 684
            + E+ L   W S + IRVR+ L  K + YEY EE+L +KS LLL  NPVHK +PVL+H GRP  ES +IVQYIDEVW   A     ++PSDPY+RA ARFW  ++D    D +R  W      +                L+TLEG  G+    KPFFGGD  G+VD+ L  +  WF   +   G+  ++ A  P   AW +R    +     +P D  K+ EF
Sbjct:    4 SGELKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVD----DKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223          
BLAST of FC930040 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.106e-32
Identity = 85/217 (39.17%), Postives = 124/217 (57.14%), Query Frame = 1
Query:   70 EVVLSDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDRKM----YDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL---SLIPFYCWFYTYETCG-KFNVEAECPKFIAWVKRCLQRETVAQALPDGKKVFEFVSAM 696
            EV L   W S F  RV +AL  KG+ YEY EE L+NKSPLLL +NP+HKK+PVL+HNG+   ES +I++YIDE W    P+LP DPY+R++ARF+   +D ++    + S+ +    KG            ++  LE +L  K +FGG   G++D    SLIPF C    +E  G +   E + P+F  WV+   + E V   +P  ++  E ++ M
Sbjct:    6 EVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN-PILPQDPYERSKARFFAKLVDEQIMNVGFISMARA-DEKG--REVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPF-CLERGWEGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMNYM 217          
BLAST of FC930040 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.170e-32
Identity = 74/152 (48.68%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   70 EVVLSDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDRKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL 525
            EV L     S F  RV  AL  KGVKYE+ EEDL+NKSPLLLQ NP+HKKIPVLIHNG+  CES +I++YIDE ++  + +LP DPY RA ARFW  +++ K   ++ K++ +KG            +LK L+ +  DK  F GD FG+ D+
Sbjct:    3 EVKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPS-ILPKDPYDRALARFWAKYVEDK-GAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADI 152          
BLAST of FC930040 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 72/216 (33.33%), Postives = 103/216 (47.69%), Query Frame = 1
Query:   97 SMFGIRVRIALAEKGVKYEYKEEDL-KNKSPLLLQMNPVHKKIPVLI-HNGRPFCESPIIVQYIDEVWKDKAP------LLPSDPYQRAQARFWVDFIDRKMYD-----SLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNF--GYVDLSLIPFYCWFYTYETCGKFN----VEAEC-PKFIAWVKRCLQRETVAQALPDGKKVFEF 684
            S F  R R+AL  +GV YE  +E L   KS  LL  NPV+ KIPVL+  +GR  CES +IVQYI++V ++         LLP DPY+RA  RFW  FID K +      SL  T   +             + +  + +   + FF G +   G +DL+L    C+      C + +    ++A   P    W +R        + LPD +KV +F
Sbjct:    9 SPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLAL---GCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221          
BLAST of FC930040 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   76 VLSDFWPSMFGIRVRIALAEKGVKYEYKEEDL--KNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQAR 348
            VL  +W S    RVRIALA K V YEYK  DL  +     L ++NP   K+P  + +G+   ES  I++Y++E   D  PLLP DP +RA AR
Sbjct:    7 VLYSYWRSSCSWRVRIALALKNVDYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPD-VPLLPKDPIKRAHAR 97          
The following BLAST results are available for this feature:
BLAST of FC930040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GSTX3_TOBAC3.674e-3643.33Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTU6_ORYSJ6.928e-3540.18Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTXA_ARATH1.106e-3239.17Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_SOLTU7.170e-3248.68Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX2_MAIZE6.961e-1933.33Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
MAAI_CAEEL5.342e-1144.09Probable maleylacetoacetate isomerase OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC34003B06EF PostHarvC1 Citrus clementina cDNA clone C34003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930040 ID=FC930040; Name=FC930040; organism=Citrus clementina; type=EST; length=734bp
GGCGTGTTTGTCTTGTCTTTTCATTTATTCACTCTTGACTCTTAGTAAGC
TTCTGTCACAATGGCGAACGAAGTGGTTCTGTCGGATTTCTGGCCCAGCA
TGTTTGGGATAAGGGTCAGGATTGCTCTGGCGGAGAAAGGCGTCAAGTAT
GAGTACAAGGAAGAGGACTTGAAGAACAAGAGCCCCCTGCTTCTGCAGAT
GAACCCCGTTCACAAGAAGATCCCGGTTCTCATCCACAACGGCAGACCGT
TCTGTGAGTCACCCATCATTGTTCAGTACATTGATGAAGTGTGGAAGGAC
AAGGCTCCATTGCTTCCCTCTGATCCCTACCAGAGAGCTCAAGCTAGGTT
CTGGGTAGATTTCATTGACAGGAAGATGTACGATTCTTTGAGGAAGACAT
GGACCACAAAGGGAGAAGAGCAGGAGGCAGCTAAGAAGGAGTTCTTTGAA
GTTCTGAAGACTTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTTCGGAGG
AGACAATTTTGGGTATGTGGATTTAAGTTTGATCCCATTCTATTGTTGGT
TTTACACGTATGAGACATGTGGAAAGTTCAACGTCGAGGCTGAGTGCCCC
AAGTTCATAGCTTGGGTGAAGAGATGCTTGCAGAGAGAGACTGTTGCCCA
GGCACTTCCTGATGGGAAGAAAGTGTTTGAATTTGTTTCAGCGATGAGGA
CAAATTTAGGATTGGAGTAGAGAGAAAAAGGACA
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