FC930041

Overview
NameFC930041
Unique NameFC930041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.529e-49
Identity = 94/169 (55.62%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  149 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 649
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT  L +LL  DDKFGFI++DGNGTLFGTL GNT+EVLH
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGTLFGTLQGNTKEVLH 170          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.314e-49
Identity = 94/169 (55.62%), Postives = 124/169 (73.37%), Query Frame = 2
Query:  149 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 649
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT  L +LL  DDKFGFI++DGNG LFGTL GNTREVLH
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGALFGTLQGNTREVLH 170          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.004e-46
Identity = 86/143 (60.14%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 649
            RG+GTSM+SLI+PP+ Q++  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKLY + P NGL+LY G ++ ++GKE K+ IDFEP++PIN SLY CD+KFH D L  LLE+D  FGFIVMDG G L+  L GNT+ VL+
Sbjct:   27 RGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKEIKLLIDFEPYKPINTSLYFCDSKFHVDELGSLLETDPPFGFIVMDGQGALYANLQGNTKTVLN 169          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.299e-45
Identity = 84/144 (58.33%), Postives = 115/144 (79.86%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHS 652
            RG GTS+IS+ M P++Q+S +   L +E+GTASNIKS  N+ SV  AIT++  RLK YN++PPNGL+LY GT++T + KEKK+T+D EPF+P++ SLYLCDNKFHT+ L+ +LESD+KFGFIV+DG+GT + TL G+ +E L S
Sbjct:   29 RGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKEKKLTLDIEPFKPVSRSLYLCDNKFHTEELHRMLESDEKFGFIVVDGSGTTYATLCGSVKEKLSS 172          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.936e-45
Identity = 88/146 (60.27%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVL 661
            G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL AITSA  RLKLYN++PPNGL +Y G I  +DGK  KV ID+ P++PI+  +YLCD+KFHT+ L ELL +DD FGFI+MDG  TL  TLSG  R +L  S +
Sbjct:   35 GSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGEI-EEDGKNTKVVIDYTPYKPISNFIYLCDSKFHTEHLRELLTNDDTFGFIIMDGKETLMATLSGTVRTILDRSTV 179          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.100e-44
Identity = 84/142 (59.15%), Postives = 112/142 (78.87%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            +G+GTSMI+LI+  +DQ++   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKLYNK PPNGLV++ G +  +DG EK + ID EPF+PIN +LY CD+ FHT+ + +LLE +DKFGFI+MDGNG+LFGTL G+TR VL
Sbjct:   30 KGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGEKMIKIDLEPFKPINTTLYKCDSVFHTEEVRKLLEDNDKFGFIIMDGNGSLFGTLQGSTRTVL 171          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.216e-43
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            +GNGTSM+SLI+PP+D +++  K+L  E   A NIKSR+ +QSV+ AITS +++LKLY + P NGL LY G I  +DGK EKK+  DFEPFRPIN  LY C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L
Sbjct:   32 KGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGKTEKKINFDFEPFRPINQFLYFCGGKFQTEPLLSLLADDDKFGFIIVDGNGALYATLQGNSREIL 174          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.074e-43
Identity = 81/143 (56.64%), Postives = 107/143 (74.83%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREIL 174          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.074e-43
Identity = 81/143 (56.64%), Postives = 107/143 (74.83%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREIL 174          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.713e-42
Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            +G+GTSMISLI+  +DQ++   KML DE G ASNIKSRV RQ+V  A+TS  ++LKLYNK P NGL++Y G     D  EK   ID EPF+PIN SLY CD+ FHT+ + +LLE +D+FGF++MDGNG+LFG++ G TR V+
Sbjct:   30 KGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGEKMFKIDMEPFKPINTSLYRCDSVFHTEEVKKLLEDNDRFGFLIMDGNGSLFGSVQGATRTVI 171          
The following BLAST results are available for this feature:
BLAST of FC930041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_BLEAM2.529e-4955.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU4.314e-4955.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH2.004e-4660.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB1.299e-4558.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA4.936e-4560.27Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA1.100e-4459.15Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR1.216e-4358.04Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT2.074e-4356.64Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE2.074e-4356.64Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA8.713e-4257.04Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34003B07EF PostHarvC1 Citrus clementina cDNA clone C34003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930041 ID=FC930041; Name=FC930041; organism=Citrus clementina; type=EST; length=679bp
GATTGATATCATTACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAG
TTAAGCAAATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCG
GTGCTTTTATCACTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGA
TGGTCAGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGA
TCAAAGCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTA
ATCATGCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGA
TGAGTTTGGAACTGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTG
TATTGGGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAG
GTCCCTCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGA
TGGGAAGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTA
ATGCATCTCTTTACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAAT
GAACTGTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAA
TGGAACCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACA
GTTCAGTGTTGACCTTCCNAAGAACATGG
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