FC930041

Overview
NameFC930041
Unique NameFC930041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.538e-38
Identity = 73/144 (50.69%), Postives = 105/144 (72.92%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 649
            +GNGTS+ISLI+PP++Q+S + + L D  G A NIKS+  +++V  AI S +Q+L +  ++PPNGL+LY G  + +D K EK++    EP R IN + +LC+N F+T  L ++L+  DKFGFI+MDGNG+LFGTL GN RE+LH
Sbjct:   25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILH 168          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHS 652
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNGLV + G I T   + +  T   EP  PI   +Y CD++FHT+ L  +L+  + +G IV+D      G L+G   EV+ +
Sbjct:   27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVEN 169          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNG V + G I T   + +  T   EP  PI   +Y CD++FH + L  +LE  + +G IV+D      G L+G   EV+
Sbjct:   27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVV 167          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EVL
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVL 166          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            G GT +ISL +PP  Q+S V + L +E+ T+SNIKS+  R++VL AI S   RLK Y + P  GLV + G I T   + +  T   EP  PI   +Y CD+ FH + L   L+  D +G IV+D      G L G   EV+
Sbjct:   23 GRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVV 163          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   E+L
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELL 166          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY K P NGL L+ G +   +G          P  P+   LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 640
            RG GT +I++ +PP +++S V   + +E+  ASNIKS+  R++V  AI    QRLK+  + P NGLV+  GT V D  KEK V    EP  P++  +Y CD+KF+ + L E LE  D +G +VMD      G + G   E
Sbjct:   23 RGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIE 161          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P  GL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+
Sbjct:   22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVI 163          
The following BLAST results are available for this feature:
BLAST of FC930041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_LOXST1.538e-3850.69Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEVO3.929e-2642.66Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_THEAC5.674e-2542.55Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_PYRAB8.193e-2440.85Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRKO1.825e-2338.73Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PICTO1.825e-2341.13Peptide chain release factor subunit 1 OS=Picrophi... [more]
RF1_PYRHO2.384e-2340.14Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THEON3.113e-2338.73Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_METKA3.113e-2340.71Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_THESM4.066e-2338.03Peptide chain release factor subunit 1 OS=Thermoco... [more]

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Properties
Property NameValue
Genbank descriptionC34003B07EF PostHarvC1 Citrus clementina cDNA clone C34003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930041 ID=FC930041; Name=FC930041; organism=Citrus clementina; type=EST; length=679bp
GATTGATATCATTACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAG
TTAAGCAAATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCG
GTGCTTTTATCACTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGA
TGGTCAGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGA
TCAAAGCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTA
ATCATGCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGA
TGAGTTTGGAACTGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTG
TATTGGGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAG
GTCCCTCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGA
TGGGAAGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTA
ATGCATCTCTTTACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAAT
GAACTGTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAA
TGGAACCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACA
GTTCAGTGTTGACCTTCCNAAGAACATGG
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