FC930041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.538e-38 Identity = 73/144 (50.69%), Postives = 105/144 (72.92%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 649 +GNGTS+ISLI+PP++Q+S + + L D G A NIKS+ +++V AI S +Q+L + ++PPNGL+LY G + +D K EK++ EP R IN + +LC+N F+T L ++L+ DKFGFI+MDGNG+LFGTL GN RE+LH Sbjct: 25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILH 168
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26 Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHS 652 G GT +ISL +PP Q+S V L DE+ T+SNIKS+ R++VL AI S RLK Y PPNGLV + G I T + + T EP PI +Y CD++FHT+ L +L+ + +G IV+D G L+G EV+ + Sbjct: 27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVEN 169
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25 Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 G GT +ISL +PP Q+S V L DE+ T+SNIKS+ R++VL AI S RLK Y PPNG V + G I T + + T EP PI +Y CD++FH + L +LE + +G IV+D G L+G EV+ Sbjct: 27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVV 167
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24 Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EVL Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVL 166
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23 Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ Sbjct: 22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23 Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 G GT +ISL +PP Q+S V + L +E+ T+SNIKS+ R++VL AI S RLK Y + P GLV + G I T + + T EP PI +Y CD+ FH + L L+ D +G IV+D G L G EV+ Sbjct: 23 GRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVV 163
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23 Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G E+L Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELL 166
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23 Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY K P NGL L+ G + +G P P+ LY CD F T+ L E+L D +G I ++ N G L G EV+ Sbjct: 22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23 Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 640 RG GT +I++ +PP +++S V + +E+ ASNIKS+ R++V AI QRLK+ + P NGLV+ GT V D KEK V EP P++ +Y CD+KF+ + L E LE D +G +VMD G + G E Sbjct: 23 RGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIE 161
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23 Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY + P GL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ Sbjct: 22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVI 163 The following BLAST results are available for this feature:
BLAST of FC930041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930041 ID=FC930041; Name=FC930041; organism=Citrus clementina; type=EST; length=679bpback to top |