FC930041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23 Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L + +G I ++ N G L G EVL Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVL 166
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22 Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT +I+L +PP ++ V+ L E ASNIKS+ R +VL I + RLK + K P NG+V+ +G +V +GKEK +T EP P+ Y CD+KF+ D L E+L +G IV+D G L G EVL Sbjct: 20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21 Identity = 53/143 (37.06%), Postives = 82/143 (57.34%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG GT ++S+ +PP Q+S V K + +E ++NIKS+ +++V AI QRLKL+ K P GLV++ G + G EK T FEP PI +Y C+++F+ + L E+LE + +G V+D TL G ++L Sbjct: 23 RGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDIL 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21 Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT ++S+ +PP Q+S V K + DE G ++NIKS+ R++V AI QRLKL+ K P GLV++ G I G EK T F+P + Y CD++F + L +++E + +G +V+D + TL G +++ Sbjct: 23 KGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDII 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20 Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH 649 +G GT ++S+ +P Q+S V K + DE G ++NIKS+ R++V AI QR++L+ P NGLVL+ G I G EK T FEP PI Y C+N+F + L ++E + +G V+D TL G +L+ Sbjct: 23 KGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNILN 166
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20 Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSS 655 G+GT ++++ +PP QVS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+VL++G + T G+ VT E P P+ + Y CD+ F TD L ++L FG IV+D G L G E + S+ Sbjct: 29 GSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSA 174
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSG 628 +G T +ISL +PP Q+ VT L DE G A+NIKS++ R +V GAI S RL+ +KVP NG+V +TG + K + P PI Y CD+ F+ + L ++L+ + +G +V+D G L G Sbjct: 23 KGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVG 158
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19 Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLT 664 +G GT +ISL +PP Q+S V L +E ASNIKS++ + +V GAI S RL+ Y VP NG+V +TG + K T EP +PI Y CD+ F L ++L+ +G +V+D G L+G E + T Sbjct: 23 KGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAFRNLTST 169
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19 Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSG 628 +G T +ISL +P Q+ VT L DE G A+NIKS++ R +V GAI S RL+ +KVP NG+V +TG + K + P PI Y CD+ F+ + L ++L+ FG +V+D G L G Sbjct: 23 KGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVG 158
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19 Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIV-TDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT +ISL +P ++S V + L +E ASNIKS+ R++V AI + QRLKL + G+V++ G + + G EK T EP PI +Y CD++F+ + L E LE D +G I++D N + G +L Sbjct: 23 KGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINIL 165 The following BLAST results are available for this feature:
BLAST of FC930041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930041 ID=FC930041; Name=FC930041; organism=Citrus clementina; type=EST; length=679bpback to top |