FC930041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18 Identity = 57/172 (33.14%), Postives = 86/172 (50.00%), Query Frame = 2 Query: 146 ADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSS 655 +D QE + G+GT ++++ +P QVS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G I G+ VT E P +P+ + Y CD+ F T+ L +LE FG IV+D G L G E + S+ Sbjct: 3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVEPVKSA 174
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18 Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREV---LHSSV 658 G T +ISL +PP Q+S VTK L +E ASNI S++ R +V A+ S +L+ +K+P NG+V +TGT+ T + V P P+ +Y CD+ F+ + L E+L +G +++D G L G EV LHS+V Sbjct: 24 GRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVGRQTEVIKHLHSTV 171
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18 Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSS 655 G+GT ++++ +PP Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G + + G+ VT E P +PI + Y CD+ F T+ L E+L +G IV+D + G L G + + S+ Sbjct: 29 GSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSA 174
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18 Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 224 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSS 655 G+GT ++++ +PP Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G + + G+ VT E P +PI + Y CD+ F T+ L E+L +G IV+D + G L G + + S+ Sbjct: 29 GSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSA 174
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18 Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 RG GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD++F+T++L + ++ + +G I++D N GT+ G T VL Sbjct: 23 RGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17 Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ ++ +G I++D N GT+ G T +L Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKTITIL 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ + +G I++D N GT+ G T VL Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ + +G I++D N GT+ G T VL Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646 +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V AI QRLKL + G++++ G I G EK EP P+ +Y CD+ F+TD L + ++ + +G I++D N GT+ G T VL Sbjct: 23 KGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17 Identity = 54/147 (36.73%), Postives = 80/147 (54.42%), Query Frame = 2 Query: 221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSS 655 +G+GT ++S+ +P +S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NGLV+++G T G+ VT E P PI + Y CD++F T+ L +L FG IV+D G L G E + S+ Sbjct: 28 QGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSA 174 The following BLAST results are available for this feature:
BLAST of FC930041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930041 ID=FC930041; Name=FC930041; organism=Citrus clementina; type=EST; length=679bpback to top |