FC930041

Overview
NameFC930041
Unique NameFC930041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_AERPE (Peptide chain release factor subunit 1 OS=Aeropyrum pernix GN=prf1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  233 TSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            T ++SL +PP   +S V  +L  E+    NIK +  RQ+V  A+++A  RL++    PPNGLVL+ G    D    K     F P  PI    Y  D +F TD L +++E ++  G I+++ +    G L G   EVL
Sbjct:   32 TVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTSTPPNGLVLFCG---EDMSTGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEVL 166          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_PYRAE (Peptide chain release factor subunit 1 OS=Pyrobaculum aerophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 42/144 (29.17%), Postives = 70/144 (48.61%), Query Frame = 2
Query:  221 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHS 652
            +G  T++I+L +     +  V  +L  E+ TA+NIK +  R  V   +      LK   K P NG+ ++ G  + + G  + V     P +PIN   Y+CD  FHT+ L + L +   +G +V++    +   L G   EV+ S
Sbjct:   30 KGYATTLITLYINAERPIPDVVNLLRSEWSTAANIKDKTTRTHVQDTLERIINNLKGEAKAPENGMAVFAGFHMINQGNYEWVYYVVIPPQPINTFKYICDTAFHTELLEDQLHAGVVYGIVVIERGEAVIALLKGGQWEVVKS 173          
BLAST of FC930041 vs. ExPASy Swiss-Prot
Match: RF1_SULSO (Peptide chain release factor subunit 1 OS=Sulfolobus solfataricus GN=prf1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 2
Query:  233 TSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTG-TIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 646
            T ++SL +PP   +  V  +L  E+  A NIK +  R +VL AI +A  RL    K+  NGLVL+ G    T+D K       F P   +    Y  D +FH + L +++E    +G I+++ +    G L G   E+L
Sbjct:   28 TVLLSLYIPPGRPIPDVVNLLRQEYSIAQNIKLKRTRDAVLSAIGAAIDRLNKIPKIDGNGLVLFCGENFDTEDFK----CFMFSPPDKVPLFFYRTDKEFHLEFLEDMVEDTAVYGLIIVERDEATIGLLKGARIEIL 162          
The following BLAST results are available for this feature:
BLAST of FC930041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_AERPE1.401e-1534.78Peptide chain release factor subunit 1 OS=Aeropyru... [more]
RF1_PYRAE3.814e-1329.17Peptide chain release factor subunit 1 OS=Pyrobacu... [more]
RF1_SULSO7.194e-1232.37Peptide chain release factor subunit 1 OS=Sulfolob... [more]

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Properties
Property NameValue
Genbank descriptionC34003B07EF PostHarvC1 Citrus clementina cDNA clone C34003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930041 ID=FC930041; Name=FC930041; organism=Citrus clementina; type=EST; length=679bp
GATTGATATCATTACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAG
TTAAGCAAATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCG
GTGCTTTTATCACTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGA
TGGTCAGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGA
TCAAAGCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTA
ATCATGCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGA
TGAGTTTGGAACTGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTG
TATTGGGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAG
GTCCCTCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGA
TGGGAAGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTA
ATGCATCTCTTTACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAAT
GAACTGTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAA
TGGAACCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACA
GTTCAGTGTTGACCTTCCNAAGAACATGG
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