FC930042

Overview
NameFC930042
Unique NameFC930042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:27..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAHJ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG +   +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_HAEDU (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus ducreyi GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  272 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 574
            VI MV+  TS     +   D+ S L K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC
Sbjct:    3 VIPMVVEQTSKG---ERSYDIYSRLLKERIIFLNGEVEDHMANLIVAQLLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLC 92          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI++LG +    V  LI+A+ L+L+ ED EK I  YINS G        G  T   A+YD M Y+KP + T+C+
Sbjct:   19 DIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPG--------GVVTAGMAVYDTMQYIKPDVATVCI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI++LG         L++A+ L+L+ ED +K IYLYINS G        G  T   AIYD M Y+KP + T+C+
Sbjct:   19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPG--------GSITAGMAIYDTMQYIKPDVSTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAEQ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_STAAR (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MRSA252) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
The following BLAST results are available for this feature:
BLAST of FC930042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_STAHJ3.078e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEDU3.078e-1141.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH3.078e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN3.078e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAES4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAEQ4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAT4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAR4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34003B08EF PostHarvC1 Citrus clementina cDNA clone C34003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930042 ID=FC930042; Name=FC930042; organism=Citrus clementina; type=EST; length=628bp
GATCGTCAGCCTTTTCACTCTTGCTCTCCAACAACTCCGCTACCAAATGG
AAGTAGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTTA
GCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCT
ATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACT
TCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGC
AAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAG
TGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACA
AGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAG
CTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGCC
CATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGGCGAGAAGT
TGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGTC
AAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAGC
GCTTCTCTTGGGTGCCGGTGCCAAAGGA
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