FC930042

Overview
NameFC930042
Unique NameFC930042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:27..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_SYNFM (ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L ++RI++LG +    V  +I+A+ L+L+ ED +K I+ YINS G        G  T   AIYD M ++KP + TLC+
Sbjct:   19 DIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG--------GLVTAGLAIYDTMQFIKPNVSTLCM 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_LAWIP (ATP-dependent Clp protease proteolytic subunit OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RIV LG      V  LI A+ L+L+ +D EK IYLYINS G        G  T   AIYD M Y+ P + T+C+
Sbjct:   24 DIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDPEKEIYLYINSPG--------GSVTAGLAIYDTMNYITPNVATVCM 98          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_DESMR (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L ++RI+ LG +    V  LI A+ L+L+ ED EK I++YINS G        G  +   AIYD M YV PP+ TLC+
Sbjct:   19 DIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMYINSPG--------GVVSAGLAIYDTMQYVMPPVSTLCL 93          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+R +++G      V  L++A+ L+L+ ED EK I+LYINS G        G  T   AIYD M Y+KP + T+C+
Sbjct:   20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG--------GVITAGMAIYDTMQYIKPDVSTICI 94          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_ACTPJ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 574
            D+ S L K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC
Sbjct:   19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLC 92          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP7 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 574
            D+ S L K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC
Sbjct:   19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLC 92          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP2 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 574
            D+ S L K RI++L       +  LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC
Sbjct:   19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVATLC 92          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L ++RI++LG      +  LI+A+ LYL+ ED EK IYLYINS G        G      AIYD M +++P + T+C+
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG--------GSVYAGMAIYDTMQHIQPDVSTICI 91          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L ++RI++LG      +  LI+A+ LYL+ ED EK IYLYINS G        G      AIYD M +++P + T+C+
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG--------GSVYAGMAIYDTMQHIQPDVSTICI 91          
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMM (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  269 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            P+ T  +P+    +  +   D+ + L   RI++LG      V   ++A+ LYL  ED+ KPIYLYINS G        G  T   AIYD M YVK  + T+CV
Sbjct:    2 PIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDVVTICV 96          
The following BLAST results are available for this feature:
BLAST of FC930042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_SYNFM8.954e-1139.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LAWIP8.954e-1144.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESMR8.954e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ8.954e-1140.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTPJ8.954e-1143.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP78.954e-1143.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP28.954e-1143.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB8.954e-1140.96ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA8.954e-1140.96ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMM8.954e-1137.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003B08EF PostHarvC1 Citrus clementina cDNA clone C34003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930042 ID=FC930042; Name=FC930042; organism=Citrus clementina; type=EST; length=628bp
GATCGTCAGCCTTTTCACTCTTGCTCTCCAACAACTCCGCTACCAAATGG
AAGTAGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTTA
GCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCT
ATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACT
TCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGC
AAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAG
TGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACA
AGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAG
CTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGCC
CATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGGCGAGAAGT
TGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGTC
AAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAGC
GCTTCTCTTGGGTGCCGGTGCCAAAGGA
back to top