FC930042

Overview
NameFC930042
Unique NameFC930042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:27..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930042 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:  329 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 577
            D+ S L K+RIV LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVK P+ T+CV
Sbjct:   21 DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GSVTAGLAIYDTMQYVKCPVSTICV 95
The following BLAST results are available for this feature:
BLAST of FC930042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP2_MYXXA8.954e-1145.78ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionC34003B08EF PostHarvC1 Citrus clementina cDNA clone C34003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930042 ID=FC930042; Name=FC930042; organism=Citrus clementina; type=EST; length=628bp
GATCGTCAGCCTTTTCACTCTTGCTCTCCAACAACTCCGCTACCAAATGG
AAGTAGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTTA
GCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCT
ATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACT
TCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGC
AAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAG
TGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACA
AGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAG
CTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGCC
CATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGGCGAGAAGT
TGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGTC
AAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAGC
GCTTCTCTTGGGTGCCGGTGCCAAAGGA
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