FC930049

Overview
NameFC930049
Unique NameFC930049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
PostHarvC1cdna_library
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.991e-79
Identity = 141/178 (79.21%), Postives = 165/178 (92.70%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+DVT+LIG TP+VYLN IV GCVA IAAKLE+MEPC SVKDRIG+SMI+DAEEKGLI PG++VL+EPTSGNTGIGLAF+AA++GY+LI+TMPASMSLERR++L AFGAELVLTDPA+GMKGAV KAEEI + TP++Y+LQQF+NPANPKIHYETTGPEIW+ T GKID LV+GIGT
Sbjct:   67 IAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGT 244          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.417e-78
Identity = 140/178 (78.65%), Postives = 163/178 (91.57%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+DVT+LIG TP+VYLN I  GCVA IAAKLE+MEPC SVKDRIG+SMI DAEEKGLI PG++VL+EPTSGNTGIGLAF+AA++GY+LI+TMPASMSLERR++L AFGAELVLTDPA+GMKGAV KAEEI + TP++Y+LQQF+NPANPKIHYETTGPEIW+ T GKID LV+GIGT
Sbjct:   69 IAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGT 246          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.696e-77
Identity = 140/178 (78.65%), Postives = 161/178 (90.45%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA +  +LIGKTP+VYLN +V GCVA +AAKLE+MEPC SVKDRIGYSMI DAEEKGLI PG+SVL+E TSGNTGIGLAF+AA+KGY+LI+TMPASMSLERR++L AFGAELVLT+PA+GM GA+QKAEEI  KTPNSY+LQQF+NPANPKIHYETTGPEIW+ T GKID LV+GIGT
Sbjct:   75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGIGT 252          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.124e-76
Identity = 136/178 (76.40%), Postives = 159/178 (89.33%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA +V++LIGKTP+VYLN I  GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+GM GAVQKAEEI   TP++Y+LQQF+NPANPKIHYETTGPEIW  T GK+D  V+GIGT
Sbjct:  113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGT 290          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.536e-75
Identity = 134/178 (75.28%), Postives = 160/178 (89.89%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+DV++LIGKTP+VYLN +  G VA IAAKLE MEPC SVKDRIGYSMI DAE+KG+I PG++ L+EPTSGNTGIGLAF+AAA+GY++ +TMPASMS+ERR++L AFGAELVLTDPA+GMKGAV+KAEEI  KTP+SY+LQQF+NPANPKIHYETTGPEIW+ T GK+D  V+GIGT
Sbjct:   67 IAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKGMKGAVEKAEEILKKTPDSYMLQQFDNPANPKIHYETTGPEIWEDTKGKVDIFVAGIGT 244          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.759e-66
Identity = 120/178 (67.42%), Postives = 151/178 (84.83%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+DVT+LIG TP+VYLNR+ DGC+A IAAKLE MEPC SVKDRIG SMI +AE  G I P ++VL+EPT+GNTG+G+AF+AAAKGY+LI+TMPAS+++ERRM+L A GAE+VLT+P +G+KGAV KA+EI  KT N+Y+ QQF+N AN KIH+ETTGPEIW+ T G +D  V+GIGT
Sbjct:   99 IAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKLIVTMPASINIERRMLLRALGAEIVLTNPEKGLKGAVDKAKEIVLKTKNAYMFQQFDNTANTKIHFETTGPEIWEDTMGNVDIFVAGIGT 276          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.671e-57
Identity = 109/180 (60.56%), Postives = 144/180 (80.00%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRI--VDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA ++TELIG+TPLV LNRI  ++GC A+I  KLE M P +SVKDRIG +MI  AE++GLI PG+++LIEPTSGNTGI LA +AAAKGY+LI+TMP +MS ERR +L A+GA+L LT  + GM G +++A+E+ +  PN+Y+LQQF+NPANP+IH +TT  EIW+ T G ID LV+G+GT
Sbjct:    3 IASNITELIGRTPLVRLNRIPLLEGCGAKIVVKLEGMNPAASVKDRIGINMINRAEQEGLIEPGKTLLIEPTSGNTGIALAMVAAAKGYQLILTMPETMSQERRAMLKAYGAKLELTPGSEGMGGCIRRAQELAESLPNAYMLQQFDNPANPQIHQQTTALEIWQDTDGAIDFLVAGVGT 182          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 104/178 (58.43%), Postives = 136/178 (76.40%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+D+T+LIG+TPLV L R+ DG VA I AKLE   P +SVKDRIG +M+  AE+ GLI+P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT  A GM GA+ KAEE+       +V QQFENPANP IH  TT  E+W+ T GK+D +V+G+GT
Sbjct:    3 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 179          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 104/178 (58.43%), Postives = 136/178 (76.40%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+D+T+LIG+TPLV L R+ DG VA I AKLE   P +SVKDRIG +M+  AE+ GLI+P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT  A GM GA+ KAEE+       +V QQFENPANP IH  TT  E+W+ T GK+D +V+G+GT
Sbjct:    3 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 179          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.493e-54
Identity = 103/178 (57.87%), Postives = 133/178 (74.72%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA+DVT+L+G TPLV L R+ +G +A + AKLE   P +SVKDRIG +MI  AEE GLI+P ++V++EPTSGNTGI LA + AA+GY  ++TMP +MS+ERRM+L A+GAEL+LT  A GM GA+ KAEE+       ++ QQFENPANP IH  TT  E+W+ T GK+D  VSGIGT
Sbjct:    3 IAEDVTQLVGNTPLVRLRRVTEGALADVVAKLESFNPANSVKDRIGVAMIDTAEEAGLIKP-DTVILEPTSGNTGIALAMVCAARGYHCVLTMPETMSIERRMLLRAYGAELILTPGADGMSGAIAKAEELAKSDKRYFIPQQFENPANPAIHAATTAEEVWRDTDGKVDIFVSGIGT 179          
The following BLAST results are available for this feature:
BLAST of FC930049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSKP_CAPAN8.991e-7979.21Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU3.417e-7878.65Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH1.696e-7778.65Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH7.124e-7676.40Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_SPIOL3.536e-7575.28Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK4_ARATH1.759e-6667.42Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_SYNY35.671e-5760.56Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCTU5.308e-5558.43Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO5.308e-5558.43Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_MYCLE4.493e-5457.87Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]

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Properties
Property NameValue
Genbank descriptionC34003C03EF PostHarvC1 Citrus clementina cDNA clone C34003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930049 ID=FC930049; Name=FC930049; organism=Citrus clementina; type=EST; length=682bp
GAATTATTATCAGGAGATTTAGTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGAT
TGCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCA
ACCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATG
ATGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGC
TGATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTG
AGCCTACCAGCGGTAATACTGGTATAGGGTTGGCATTCATGGCAGCTGCT
AAGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAG
AAGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTG
CCAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAG
ACACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAA
GATCCACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACCGGTGGTA
AGATTGATGCCCTTGTTTCTGGTATAGGGACT
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