FC930049

Overview
NameFC930049
Unique NameFC930049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.958e-41
Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG---TGGKIDALVSGIGT 682
            I  +  +LIG TPLV LNR+     A++  KLE   P  SVKDR  Y MI +AE+ GL++PG SV+IEPTSGNTGIGLA  AAA+GY+ I+ MP +M+ ER  +L A+GAE+VLT     M G+++KA+E+ ++ PNSY+  QF+N ANP  H +TT PEI +     G  + A V+  GT
Sbjct:    4 IVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDNTANPDAHRKTTAPEIARAIEEIGKPLGAFVASSGT 183          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  167 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + IG TPLV L R+     + +  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A E+ ++     +L QF NP NP  HY TTGPEIW+ TGG+I   VS +GT
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGT 175          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 87/172 (50.58%), Postives = 111/172 (64.53%), Query Frame = 2
Query:  167 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + IG TPLV L R+     + I  KLE   P  SVKDR   SMI +AE++G I+PG+ VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR  + A+GAEL+L    +GM+GA   A  + ++     +L QF NP NP  HY TTGPEIW+ T G+I   VS +GT
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGT 175          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 2
Query:  161 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G IRPG++ LIE TSGNTGI LA  AA KGY++I+ MP + + ER+  + A+GAEL+L     GM+GA   A++++ +     VL QF N  NP+ HY +TGPEIW+ TGG I   VS +GT
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADKLQ-REGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSITHFVSSMGT 179          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 88/183 (48.09%), Postives = 112/183 (61.20%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G +RPG+++ IEPTSGNTGIGLA  AA KGYR II MP  MSLE+  VL A GAE+V T   AR    +  V  A  ++ + PNS++L Q+ N +NP  HY+TT  EI +   GK+D LV+  GT
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNASNPLAHYDTTAEEILQQCDGKLDMLVASAGT 257          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 81/182 (44.51%), Postives = 113/182 (62.09%), Query Frame = 2
Query:  146 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            +I  ++ + IG TPLV +N++       + AK E      SVKDRIG+ MI DAEE G I+ G++ LIEPTSGNTGIGLA  AA KGY++IIT+P  MS E+  VL A GAE++ T         +  +  A+++  + PNS++L Q+ NP+NP  HY+ T  E+ +   GKID +V   GT
Sbjct:   31 LIMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEELLEQCEGKIDMIVCTAGT 211          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 76/178 (42.70%), Postives = 109/178 (61.24%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            +  D+TELIG TPL+ L          + AKLEMM P  S+KDR+G  +I DA + G ++PG  V+IE T+GNTGIGLA  A   G + I  +P   S E++ ++ A GA ++ T    GM+GA+QKA ++  +  NSY + QF+N  NP  +Y+T GPE+W+   G I   V+G G+
Sbjct:    3 VITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNIHTFVAGAGS 179          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.041e-34
Identity = 86/183 (46.99%), Postives = 111/183 (60.66%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            I  D+   IG TP+V +NRI    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI +   GK+D LV+  GT
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKVDMLVASAGT 254          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 84/183 (45.90%), Postives = 113/183 (61.75%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            I  D+ + IG TP++ +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA +GYR II MP  MS E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+TT  EI +   GK+D LV+ +GT
Sbjct:   76 ILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILRQCDGKLDMLVASVGT 257          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.775e-34
Identity = 85/183 (46.45%), Postives = 113/183 (61.75%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            I  D+ + IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA +GYR II MP  MS E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+TT  EI +   GK+D LV+ +GT
Sbjct:   76 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 257          
The following BLAST results are available for this feature:
BLAST of FC930049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_BACSU1.958e-4149.72Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSM_ECOLI1.188e-3851.16Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_SALTY7.700e-3850.58Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CYSM_PSEAE5.518e-3647.13Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CBS_RABIT2.097e-3548.09Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_DICDI2.097e-3544.51Cystathionine beta-synthase OS=Dictyostelium disco... [more]
MCCA_BACSU2.739e-3542.70O-acetylserine dependent cystathionine beta-syntha... [more]
CBS_RAT1.041e-3446.99Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_MACFA1.775e-3445.90Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_HUMAN1.775e-3446.45Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]

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Properties
Property NameValue
Genbank descriptionC34003C03EF PostHarvC1 Citrus clementina cDNA clone C34003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930049 ID=FC930049; Name=FC930049; organism=Citrus clementina; type=EST; length=682bp
GAATTATTATCAGGAGATTTAGTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGAT
TGCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCA
ACCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATG
ATGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGC
TGATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTG
AGCCTACCAGCGGTAATACTGGTATAGGGTTGGCATTCATGGCAGCTGCT
AAGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAG
AAGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTG
CCAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAG
ACACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAA
GATCCACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACCGGTGGTA
AGATTGATGCCCTTGTTTCTGGTATAGGGACT
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