FC930049

Overview
NameFC930049
Unique NameFC930049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 83/178 (46.63%), Postives = 112/178 (62.92%), Query Frame = 2
Query:  161 VTELIGKTPLVYLNRIVDGCV---ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + +L+G TPLV + + +   +     I AKLE   P  SVKDR   SM  DA ++GLI+ G+ V+I+ TSGNTGI LA + AA G  + + MPA++S ER+ ++ AFGA+L LTDP  G  GA+    E+  K P  YV L Q+ NPAN K H+ +TG EIW  T G+I   V+GIGT
Sbjct:   25 ILKLVGNTPLVRVKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPANWKAHFYSTGIEIWNQTKGRITHFVAGIGT 201          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP-AR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            I  D+   IG TP+V +N+I    G    + AK E      SVKDRI   MI DAE  G ++PG+++ IEPTSGNTGIGLA  AA KGYR II MP  MS+E+  VL A GAE+V T   AR    +  V  A  ++++ PNS++L Q+ N +NP  HY+ T  EI +   GK+D LV+  GT
Sbjct:   73 ILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLDMLVASAGT 254          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 2
Query:  161 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 649
            + + +G TPLV L R+       +  KLE   P  SVKDR   SMI  AE +G I PG++ LIE TSGNTGI LA  AA KGYR+I+ MP + S ER+  + A+GAEL+      GM+GA   AE ++ +     VL QF N  NP+ HY +TGPEIW+ TGG
Sbjct:    8 IADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGARDLAERMQAE-GRGKVLDQFANGDNPEAHYTSTGPEIWRQTGG 168          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 77/178 (43.26%), Postives = 106/178 (59.55%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + + V+ELIG TP+++L +        + AK E + P  S+KDR  + MI DA +   I   ++ ++E TSGNTGI LA + A  G + I  MP SMSLERR ++  FGA L LT    GMKGAV KA EI   TPNS+++ QFEN +N   H + T  EI +    ++D  V+G GT
Sbjct:    3 VHEKVSELIGNTPIIHLKKFG----INVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQ-DTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILRDLDNELDIFVAGFGT 175          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 79/185 (42.70%), Postives = 109/185 (58.92%), Query Frame = 2
Query:  158 DVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK-----GTGGKIDALVSGIGT 682
            +V +L+G TPL+ L ++    G   +I AKLE+  P  S+KDRI  SM+ +AE  G I P  S LIEPTSGNTGIGLA + A KGYR IIT+P  MS E+  VL A GAE++ T  A      +  +  A+++  + P + +L Q+ N  NP+ HY  TG EI +          + A+V+G GT
Sbjct:   13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREIQRQLEDLNLFDNLRAVVAGAGT 197          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 78/177 (44.07%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  161 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGM---KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            +TE IG TPL+ L R+ +   + I AK E   P  SVKDR    ++ DAEE+GL++PG +V +E T+GNTGIGLA +  +KGY+L+I MP + S  +  +L   GAE V   PA      +    KA    +   N+    QF+N AN + H ETTGPEIW  TGGK+DA     GT
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAE-VYPVPAVAFDNPENYNHKARRHAESLDNAVWTNQFDNTANRRAHIETTGPEIWAQTGGKLDAFTCSTGT 210          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 79/179 (44.13%), Postives = 104/179 (58.10%), Query Frame = 2
Query:  167 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + +G TPLV L R+        DG   R+ AKLE   P  S+KDR    MI  AE  GL+RPG ++L EPTSGNTGI LA  A  KGYRLI  MP + S+ERR +L  +GA+++ +    G   AV  A+E+    P+  +L Q+ NPAN   HY  TGPE+      +I   V+G+GT
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGT 185          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.464e-30
Identity = 79/179 (44.13%), Postives = 104/179 (58.10%), Query Frame = 2
Query:  167 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            + +G TPLV L R+        DG   R+ AKLE   P  S+KDR    MI  AE  GL+RPG ++L EPTSGNTGI LA  A  KGYRLI  MP + S+ERR +L  +GA+++ +    G   AV  A+E+    P+  +L Q+ NPAN   HY  TGPE+      +I   V+G+GT
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGT 185          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 72/172 (41.86%), Postives = 96/172 (55.81%), Query Frame = 2
Query:  173 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL--VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IG+TPL+ LN + +     I AK E   P  SVKDR  Y ++ DAE+KG +  G ++ +E T+GNTGIGLA +A A+GY+ +I MP + S  +   L   GAE+  V   P         +A    + TPN+    QF+N AN   HYETTGPEIW  T G +D      GT
Sbjct:   21 IGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI-VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFTCSTGT 191          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 75/184 (40.76%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  161 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL------VLTDPARGMKGAVQKAEEIRDKTPN---SYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            V ELIG TPLV +  +       I AKLE+  P  S KDR+  ++I  AEE G L+R     + E TSG+TGI +A +  A GYR  I++P   SLE+  +L + GA +       + DP + +  A +   E++ K+ N   +    QFEN AN K+HY+TTGPEI   T G IDA ++G GT
Sbjct:   49 VEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELK-KSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDAFIAGCGT 231          
The following BLAST results are available for this feature:
BLAST of FC930049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_AQUAE2.318e-3446.63Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
CBS_MOUSE5.165e-3446.45Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CYSM_PSESY5.711e-3347.85Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CYSM_CAMJE1.662e-3243.26Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CBS_YEAST1.407e-3142.70Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CYSK_EMENI4.092e-3144.07Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
CYSM_MYCTU3.464e-3044.13Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO3.464e-3044.13Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK1_SCHPO4.235e-2841.86Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSK_YEAST1.043e-2640.76Putative cysteine synthase OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionC34003C03EF PostHarvC1 Citrus clementina cDNA clone C34003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930049 ID=FC930049; Name=FC930049; organism=Citrus clementina; type=EST; length=682bp
GAATTATTATCAGGAGATTTAGTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGAT
TGCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCA
ACCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATG
ATGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGC
TGATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTG
AGCCTACCAGCGGTAATACTGGTATAGGGTTGGCATTCATGGCAGCTGCT
AAGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAG
AAGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTG
CCAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAG
ACACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAA
GATCCACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACCGGTGGTA
AGATTGATGCCCTTGTTTCTGGTATAGGGACT
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