FC930050

Overview
NameFC930050
Unique NameFC930050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  310 IGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNR--KGLSYRLGLNKFADWSWEE----------------------FQRHRLGAAQNCSATTKG--NHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            I   ++A  F +F + + K+Y++++E   +F  F  N   I++ N+  K   Y+  +N+F+D+S EE                      F+ H           T G  N K     +PE  D+RE GIV   KDQG CGSCW F++ G++E+ +
Sbjct:  216 INNIKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVF 370          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 43/121 (35.54%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  352 RRYGKIYESVEEMKLRFATFSKNLDLIRSTN-RKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK--------DWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            R +  +   ++E   RF  F +N+  I   N +K   Y+L LNKF D + +EF+    G+      + +G  K T   + E          DWR  G V+ VKDQG CGSCW FST  S+E
Sbjct:   44 RTHHTVARDLDEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVE 164          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 47/130 (36.15%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  346 FARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRK----GLSYRLGLNKFADWSWEEF---------QRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            F  ++GK Y + EE   R + F   L  I+  N +     ++Y L +N F+D + EE          +RH L      + TT     + ADV     DWR  G V+PVKDQG CGSCW FS   +LE A+
Sbjct:   23 FKTKFGKKYANSEEESHRMSVFMDKLKFIQEHNERYDKGEVTYWLKINNFSDLTHEEVLATKTGMTRRRHPLSVLPKSAPTTP----MAADV-----DWRNKGAVTPVKDQGQCGSCWAFSAVAALEGAH 143          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  364 KIYESVEEMKLRFATFSKNLDLIRSTNR-KGLSYRLGLNKFADWSWEEFQ----RHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            K Y  + E + RF  F  NL  +   N     ++ +GL +FAD + EEF+    R ++   ++   T +  +K   DVLP+  DWR +G V  VKDQG+CGSCW FS  G++E
Sbjct:   53 KNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNEEFRAIYLRKKMERTKDSVKTERYLYK-EGDVLPDEVDWRANGAVVSVKDQGNCGSCWAFSAVGAVE 164          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 41/119 (34.45%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  352 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA-------DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            R +  +  S+ E + RF  F  N   + + N+    Y+L LNKFAD +  EF+    G+        +G  +          D +P + DWR+ G V+ VKDQG CGSCW FST  ++E
Sbjct:   42 RSHHTVSRSLHEKQKRFNVFKHNAMHVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVE 160          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  355 RYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            +Y K Y   EE  LR A + +N+ +I+  N++      ++ + +NKF D + EEF++         + T        +  LP+ KDWRE G V+PV++QG CGSCW F+  G++E
Sbjct:   35 KYAKSYSPKEEA-LRRAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIE 148          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  385 EMKLRFATFSKNLDLIRSTNRKG-LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN------HKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            E   RF TF  N   I S N++G   YRL LN+F D    EF+   +G  +  + +   +        L    LP + DWR+ G V+ VKDQG CGSCW FST  S+E
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVE 168          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 43/130 (33.08%), Postives = 65/130 (50.00%), Query Frame = 1
Query:  346 FARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRK----GLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            F   + K Y+   E + R   F++N   I   N++     +S++L +NK+AD    EF++   G         +   +    V         LP++ DWR  G V+ VKDQGHCGSCW FS+TG+LE  +
Sbjct:   62 FKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQH 191          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  337 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTN-RKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTK---GNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            F  +   YG++Y+  +E   RF  F  N+  I + N R   SY LG+N+F D +  EF     G +   +   +       +    +P++ DWR+ G V+ VK+Q  CGSCW+F+   ++E  Y
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVSLPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIY 160          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  337 FARFARRYGKIYES----VEEMKLRFATFSKNLDLI--RSTNRKGLSYRLGLNKFADWSWEEFQRHRLGA----AQNCSATTKGNHKLTA----DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            + R++  +GK   +    + +   RF  F  NL  I   + N K  +Y+LGL  FA+ + +E++   LGA     +  +     N K +A    D +P T DWR+ G V+ +KDQG CGSCW FST  ++E
Sbjct:    4 YLRWSLEHGKSNSNSNGIINQQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVE 134          
The following BLAST results are available for this feature:
BLAST of FC930050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
CYSP_PLAFA1.818e-1329.68Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CYSP_HEMSP1.818e-1335.54Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CRUST_PANBO1.818e-1336.15Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CPR1_ARATH1.818e-1338.05Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CYSEP_RICCO2.375e-1334.45Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CATJ_MOUSE4.051e-1334.78Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CYSP2_HORVU6.910e-1339.81Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CATL_DROME6.910e-1333.08Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
BROM1_ANACO6.910e-1331.45Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP4_BRANA9.024e-1334.35Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]

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Properties
Property NameValue
Genbank descriptionC34003C04EF PostHarvC1 Citrus clementina cDNA clone C34003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930050 ID=FC930050; Name=FC930050; organism=Citrus clementina; type=EST; length=699bp
GATGATACGGAATCTTGAGTCTCGACTTATCTTACACCCGACGAGGCATC
TCATAATAATAATAACAATAATAATAGTGTTCATAGACTGCATTCATTTA
ATCCGAAGCCCTTGAGTGCGGTGCACTCTCTCCAAACAAAACAGACACAA
TCATTAGGCATGGCTCGCCCTGAACATTTGGTCTCGTCCATCATCTTGTT
GCTTTGCTGCGCTGCCGCAGCATCAGCATCAAGCTTCGACGACTCCAATC
CGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGACCTCCGTC
CTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCCGTTTTGC
TCGCAGGTATGGAAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCCGGT
TCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACGAATCGTAAA
GGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGATTGGAGCTGGGA
AGAGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCTGCCACTA
CAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGAC
TGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTGTGG
ATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACACC
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