FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 91/162 (56.17%), Postives = 114/162 (70.37%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG  EDV++AV AA+ AF  G PW RM A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   40 QIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAAQAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 201          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.294e-46
Identity = 93/167 (55.69%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  222 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +V Y Q+ IN ++ D+ S KTFPT++P TG+VI  VA G+ EDV+RAV AAR AF  G PW RM A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNFPLLM A K+GPA
Sbjct:   16 EVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAAKLGPA 182          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.294e-46
Identity = 93/167 (55.69%), Postives = 118/167 (70.66%), Query Frame = 3
Query:  222 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP-ADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            ++ +T+L INGQF+D+ASGKTF T+DPR G+VI  +AEG+ EDV+ AV+AAR AFD GPWPRMT +ER+K+I +FADL+E + +E+A L+  D GK F+     ++P T   FRY AG ADKI G T           TL EPIGV G IIPWNFP +MFA KV PA
Sbjct:   16 EIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIPATAGHFRYNAGAADKIHGETLKMTRQSLFGYTLKEPIGVVGNIIPWNFPSIMFATKVAPA 182          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.294e-46
Identity = 93/174 (53.45%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  201 DPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +PI  P ++ Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+ AV AAR+AF  G PW RM A ER +++ R ADL+ER    +A+LET DNGKPF++S   ++    +++RY AGWADK  G T P DG +   T HEP+GV GQIIPWNFPL+M  WK+ PA
Sbjct:   29 NPIPNP-EIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYLAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPA 201          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.294e-46
Identity = 92/174 (52.87%), Postives = 123/174 (70.69%), Query Frame = 3
Query:  201 DPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +PI  P ++ Y +L IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+ AV AAR+AF  G PW RM A ER +++ R ADL+ER    +A+LET DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEP+GV GQIIPWNFPL+M  WK+ PA
Sbjct:   29 NPIPNP-EICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPA 201          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.441e-45
Identity = 85/171 (49.71%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  210 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            TP +++ YT++ IN ++ +S SG+ FP  +P TG+ +  V E +  D+++AV AAR AF  G  W RM A ER +++ + ADL+ER    +A +E+ + GKPF Q+   ++    + FRYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNFPLLMFAWK+ PA
Sbjct:   30 TPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPA 200          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.437e-45
Identity = 84/161 (52.17%), Postives = 109/161 (67.70%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I+G+FV SASG TF T +P TG+ +  + E +A DV++AV AARKAFD+G W  M+   RS+++ + ADL+E H  E+A LET DNGKP  ++   ++P+     RYYAGW  KI G T P  G Y   T HEP+GV GQIIPWNFPLLM  WK+G A
Sbjct:   21 KLYIDGKFVPSASGATFDTPNPATGETLMTLYEAQAADVDKAVKAARKAFDQGEWRTMSPASRSRLMYKLADLMEEHKTELAQLETLDNGKPINETTNGDIPLAIEHMRYYAGWCTKITGQTIPVSGAYFNYTRHEPVGVVGQIIPWNFPLLMAMWKMGAA 181          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  210 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            TP +++ YT++ IN ++ +S SG+ FP  +P TG+ +  V E +  D+++AV AAR AF  G  W RM A ER +++ + ADL+ER    +A +E+ + GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNFPLLMF WK+ PA
Sbjct:   30 TPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPA 200          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  210 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            TP +++ YT++ IN ++ +S SG+ FP  +P TG+ +  V E +  D+++AV AAR AF  G  W RM A ER +++ + ADL+ER    +A +E+ + GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNFPLLMF WK+ PA
Sbjct:   30 TPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPA 200          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.934e-42
Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K  YT++ IN ++ DS SGK FP  +P T + +  V EG+ EDVN+AV+AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E+ + GK F  +   ++    +  RY AGWADKIQG T P+DG +   T HEP+GV GQI+PWNFPLLMF WK+ PA
Sbjct:   15 LKFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPA 182          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
ALDH2_RAT4.448e-4756.17Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_HORSE1.294e-4655.69Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
AL2C4_ARATH1.294e-4655.69Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL1B1_RAT1.294e-4653.45Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1B1_MOUSE1.294e-4652.87Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1A2_HUMAN2.441e-4549.71Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
ALDH4_BACSU5.437e-4552.17Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A2_RAT4.603e-4448.54Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE4.603e-4448.54Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A1_HORSE1.934e-4248.81Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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