FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.526e-42
Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +++ YT++ IN ++ +S SG+ FP  +P TG+ I  + E +  D ++AV AAR AF  G  W RM A ER  ++ + ADL+ER    +A +E+ ++GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNFPLLMFAWK+ PA
Sbjct:   33 LEIKYTKIFINNEWQNSESGRIFPVYNPATGEQICDIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGHLLDKLADLVERDRAILATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPA 200          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.526e-42
Identity = 81/168 (48.21%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +++ +T++ IN ++ +S SG+ FP  +P TG+ I  + E +  D ++AV AAR AF  G  W RM A ER +++ + ADL+ER    +A +E+ ++GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNFPLLMFAWK+ PA
Sbjct:   33 LEIKHTKIFINNEWQNSESGRVFPVYNPATGEQICEIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGQLLDKLADLVERDRAVLATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPA 200          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.627e-42
Identity = 81/168 (48.21%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ YT++ IN ++ DS SGK FP  +P T + +  V EG+ EDV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E+ + GK +  +   ++    +  RY AGWADKIQG T P DG +   T HEPIGV GQIIPWNFPL+M  WK+GPA
Sbjct:   16 LKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 7.349e-42
Identity = 83/168 (49.40%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ +T++ IN ++ DS SGK FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E  + GK F  +  +++  + +  +Y AGWADKI G T P+DG     T  EPIGV GQIIPWNFPLLMF WK+GPA
Sbjct:   16 LKIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRREPIGVCGQIIPWNFPLLMFIWKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 82/174 (47.13%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  204 PITPP-VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            P+ P  +K+ YT++ IN ++ DS SGK FP  +P T + +  V EG+  DV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E+ + GK +  +   ++    +  RY AGWADKIQG T P DG +   T HEPIGV GQIIPWNFPL+M  WK+GPA
Sbjct:   10 PVLPTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 81/168 (48.21%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ +T++ IN ++ +S SGK FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E  + GK F  +  +++    +  +Y AGWADKI G T P+DG     T  EPIGV GQIIPWNFP+LMF WK+GPA
Sbjct:   16 LKIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 81/168 (48.21%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ YT++ IN ++ DS SGK FP L+P T + I  + EG+  DV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E+ + GK F  +   ++    +  RY AGWADKIQG T P DG +   T HEP+GV GQIIPWNFPL+M  WK+GPA
Sbjct:   11 LKIQYTKIFINNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGDFFCYTRHEPVGVCGQIIPWNFPLVMLIWKIGPA 178          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 80/168 (47.62%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFD-EGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +KV++T++ IN +FVDS SGKTF T++P TG+ +  V EG+  D+++AV+AAR AF  +  + +  A +R +++ + ADL+E H  ++  LET DNGKPF  S   +  M  ++ RYYAG+ADKI G T PADG     T HEP+GV G I PWNFPL + A K+ PA
Sbjct:   13 LKVEFTKIFINNEFVDSVSGKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIEAHRVQLRTLETLDNGKPFAMSYLGDTLMAQKVLRYYAGFADKIVGQTIPADGNVFCYTRHEPVGVVGAITPWNFPLHLAASKIAPA 180          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 80/168 (47.62%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ +T++ IN ++ DS S K FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E+ + GK F  +   +V ++ +  +Y+AGWADKI G T P+DG     T  EPIGV GQIIPWN PL++F WK+GPA
Sbjct:   16 LKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLIIFTWKLGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.386e-40
Identity = 80/168 (47.62%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ YT++ IN ++ DS SGK F   +P   + I  VAEG+  D+++AV AARKAF+ G PW  M A ER +++ + ADL+ER    +A +E  D GK F  +   ++    +  RY AGWADKI G T P DG +   T HEP+GV GQIIPWNFPL+MF WK+ PA
Sbjct:   24 LKIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLVMFIWKIAPA 191          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
AL1A2_TAEGU2.526e-4248.81Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
AL1A2_CHICK2.526e-4248.21Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_HUMAN5.627e-4248.21Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_RAT7.349e-4249.40Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_MACFA1.253e-4147.13Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_MOUSE3.647e-4148.21Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_RABIT4.763e-4148.21Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ALDH_ENCBU1.061e-4047.62Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A7_MOUSE1.061e-4047.62Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_CHICK1.386e-4047.62Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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