FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 80/164 (48.78%), Postives = 107/164 (65.24%), Query Frame = 3
Query:  231 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            YT++ IN ++  S SGK FP  +P T + +  V EG+ EDV++AV AAR+AF  G PW  M A ER +++ + ADL+ER +  +A +E  + GK F  +   ++    +  RY AGWADKIQG T P DG +   T  EP+GV GQIIPWNFPLLMF WK+GPA
Sbjct:   20 YTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 81/168 (48.21%), Postives = 110/168 (65.48%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ +T+L IN ++ DS SGKTFP  +P T + I  V E + EDV++AV AAR+AF  G PW  M A ER ++I + ADL+ER    +A LE+ + GK F  +   ++    ++ RY AGWADKIQG T P DG +   T HEPIGV GQI PWN P+++ A K+GPA
Sbjct:   16 IKIQHTKLFINNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGQIFPWNAPMILLACKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  231 YTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            YT++ IN ++  S SGK FP  +P T + +  V EG+ EDV++AV AAR+AF  G PW  M A ER +++ + ADL+ER    +A +E  + GK F  +   ++    +  RY AGWADKIQG T P DG +   T  EP+GV GQIIPWNFPLLMF WK+GPA
Sbjct:   20 YTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 81/168 (48.21%), Postives = 107/168 (63.69%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            ++V +T++ IN ++ +S SGK F T +P T + I  V EG+  DV++AV AA+ AF  G PW R+ A  R +++ + ADL+ER    +AALET D GKPF  +   ++    R  RY+AGWADKIQG T P D      T HEPIGV G I PWNFPLLM  WK+ PA
Sbjct:   27 LEVKFTKIFINNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPA 194          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 85/171 (49.71%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  210 TPPVKVDYTQ-LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            TP +K +    L IN +FV    GKTF  ++P    VIT V E   +DV+ AV+AAR AF EGPW ++T  ER  +I + ADL+ER  D +AA+E+ DNGK F   A+ ++  +    RYYAGWADKI G T   +      T HEP+GV GQIIPWNFPLLM++WK+GPA
Sbjct:   10 TPVIKYEQPLGLFINNEFVKGVEGKTFQVINPSNEKVITSVHEATEKDVDVAVAAARAAF-EGPWRQVTPSERGILINKLADLMERDIDTLAAIESLDNGKAFTM-AKVDLANSIGCLRYYAGWADKIHGQTIDTNPETLTYTRHEPVGVCGQIIPWNFPLLMWSWKIGPA 178          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 82/170 (48.24%), Postives = 111/170 (65.29%), Query Frame = 3
Query:  213 PPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            P   +   QL I+ ++ D+ S KTFPT+ P TG+VI HVAEG+  DV+ A  AAR AF  G PW  M A +R  ++   ADL+ER    +A+LE+ DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEP+GV  QIIPWNFPL+M +WK+  A
Sbjct:   24 PNPDIPDNQLFISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAARAAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCCQIIPWNFPLVMQSWKLALA 193          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 76/168 (45.24%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ +T++ IN ++ +S +GK FP ++P T +VI HV EG+  DV++AV AAR+AF  G PW  M A ER  ++ + ADL+ER    +A +E+ + GK F  +   +  ++ +  +Y+AGWADKI G T P+DG     T  EPIGV GQIIPWN PL++F WK+G A
Sbjct:   16 LKIQHTKIFINNEWHNSLNGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGDVFTYTRREPIGVCGQIIPWNGPLILFIWKIGAA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 79/168 (47.02%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +K+ +T+L IN ++ +S SGKTFP  +P T + I  V E + EDV++AV AAR+AF  G PW  M A ER ++I + ADL+ER    +A LE+ + GK F  +   ++    +  RY AGWADKIQG T P DG +   T HEPIGV G I PWN P+++ A K+GPA
Sbjct:   16 IKIQHTKLFINNEWHESVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFASAYLMDLDYCIKALRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGLIFPWNAPMILLACKIGPA 183          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 80/168 (47.62%), Postives = 107/168 (63.69%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            ++V +T++ IN  + +S SG+ F T +P T + I  V EG+  DV++AV AA+ AF  G PW R+ A  R +++ + ADL+ER    +A LET D GKPF  +   ++    + FRY+AGWADKIQG T P D      T HEPIGV G I PWNFPLLM AWK+ PA
Sbjct:   27 LEVKFTKIFINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLAWKLAPA 194          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.890e-38
Identity = 83/165 (50.30%), Postives = 106/165 (64.24%), Query Frame = 3
Query:  234 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGL---TAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            T L IN +FV +  GKTF  ++P T +VI  V E   +DV+ AV+AARKAF+ GPW + T   R K++ + ADL E++ D IAA+E  DNGK F  +   +VP      RYY GWADKI+G    TAP    Y      EPIGV GQIIPWNFP+LM++WK+GPA
Sbjct:   18 TGLFINNEFVKAVDGKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN-GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAFSMAKNVDVPAAAGCLRYYGGWADKIEGKVVDTAPDSFNY---IRKEPIGVCGQIIPWNFPILMWSWKIGPA 178          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
AL1A1_BOVIN5.266e-4048.78Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
ALDH1_MACPR6.878e-4048.21Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
AL1A1_SHEEP6.878e-4048.78Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A3_HUMAN4.458e-3948.21Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
ALDH_EMENI9.932e-3949.71Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
AL1B1_BOVIN9.932e-3948.24Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
AL1A7_RAT1.297e-3845.24Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
ALDH1_ELEED1.694e-3847.02Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A3_MOUSE1.694e-3847.62Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
ALDH_ALTAL2.890e-3850.30Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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