FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ASTD_BURMS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=astD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  234 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP-ADGPYHVQTLHEPIGVAGQIIPWNFP 686
            T+L I+G + D A G  F + +P TG+ +   A   A+DV RAV++AR+AF    W  +    R  I+ RFA LL    + +A +   + GKP  ++      M  ++    A + ++     +P ADG   ++  H P GV     P+NFP
Sbjct:    2 TELFIDGAWRDGA-GPVFASRNPGTGEPVWEGAGASADDVERAVASARRAF--AAWSALDLDARCAIVKRFAALLVERKEALATMIGRETGKPLWEARTEVASMAAKVDVSIAAYHERTGERRSPTADGVAVLR--HRPHGVVAVFGPYNFP 148          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ASTD_BURMA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia mallei GN=astD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  234 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP-ADGPYHVQTLHEPIGVAGQIIPWNFP 686
            T+L I+G + D A G  F + +P TG+ +   A   A+DV RAV++AR+AF    W  +    R  I+ RFA LL    + +A +   + GKP  ++      M  ++    A + ++     +P ADG   ++  H P GV     P+NFP
Sbjct:    2 TELFIDGAWRDGA-GPVFASRNPGTGEPVWEGAGASADDVERAVASARRAF--AAWSALDLDARCAIVKRFAALLVERKEALATMIGRETGKPLWEARTEVASMAAKVDVSIAAYHERTGERRSPTADGVAVLR--HRPHGVVAVFGPYNFP 148          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: A16A1_HUMAN (Aldehyde dehydrogenase family 16 member A1 OS=Homo sapiens GN=ALDH16A1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 44/158 (27.85%), Postives = 74/158 (46.84%), Query Frame = 3
Query:  246 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +NG+++      + P  DP TG+ +    + +AEDV  AV AAR AF    W       R++ + R A+++++H   +  LE+   G+   +    +V +  +L  Y+A  A   +   A            EP+GV G I+P  F  L   W++ PA
Sbjct:   44 VNGKWLKPEHRNSVPCQDPITGENLASCLQAQAEDVAAAVEAARMAFK--GWSAHPGVVRAQHLTRLAEVIQKHQRLLWTLESLVTGRAVREVRDGDVQLAQQLLHYHAIQASTQEEALAG----------WEPMGVIGLILPPTFSFLEMMWRICPA 189          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ROCA_STAS1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 41/155 (26.45%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  240 LLINGQFVDSASGKTFPTLDP-RTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFA 701
            L+ING+  +  +  T+ +++P  T +VI  V++   +DV+ A  AA +A+    W R +  +R++ ++R A ++ R  +EI+A+  ++ GKP++++          +  Y     +   G         H +  ++PIG    I PWNFP  + A
Sbjct:   39 LVINGE--EKFTKDTYQSINPANTTEVIAEVSKATQKDVDDAFEAANEAYKS--WKRWSHKDRAEFLIRVAAIIRRRKEEISAVMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMELADGKPVLDREGEHNKYFYKPIGTGVTIPPWNFPFAIMA 189          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
ASTD_BURMS5.136e-1131.58N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURMA5.136e-1131.58N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
A16A1_HUMAN5.136e-1127.85Aldehyde dehydrogenase family 16 member A1 OS=Homo... [more]
ROCA_STAS18.761e-1126.451-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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