FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.774e-38
Identity = 79/168 (47.02%), Postives = 106/168 (63.10%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            ++V +T++ IN  + +  SG+ F T +P T + I  V EG+  DV++AV AA+ AF  G PW R+ A  R +++ + ADL+ER    +A LET D GKPF  +   ++    + FRY+AGWADKIQG T P D      T HEPIGV G I PWNFPLLM AWK+ PA
Sbjct:   27 LEVKFTKIFINNDWHEPKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVMCFTRHEPIGVCGAITPWNFPLLMLAWKLAPA 194          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: FTHFD_XENTR (10-formyltetrahydrofolate dehydrogenase OS=Xenopus tropicalis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 74/167 (44.31%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTL----HEPIGVAGQIIPWNFPLLMFAWK 707
            VK+ + QL INGQF+D+  GKT+ T++P  G  I  V+  +  D++RAV+AA++AF+ G W +M   +R +I+ R AD++E H +E+A +E+ D+G  +  + +T V M+ + FRY+AGW DKIQG T P +     + L     EPIGV G +IPWN+PL+M AWK
Sbjct:  418 VKIPH-QLFINGQFIDAEGGKTYDTVNPTDGTAICKVSLAQVSDIDRAVAAAKEAFENGEWGKMNPRDRGRILYRLADIMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTFTRREPIGVCGIVIPWNYPLMMLAWK 583          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 77/171 (45.03%), Postives = 107/171 (62.57%), Query Frame = 3
Query:  210 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            TP +K  +T++ IN QFVDS +GK +  ++P T   I  V EG   D+++AV A + AF  G PW RM A  R  ++ R ADL ER    +++LET + GKP++ SA  ++    ++ RYYAGWADK  G   P DG +   T HEP+G+ G IIPWN+P+LM  WK+ PA
Sbjct:   10 TPEIK--FTKIFINNQFVDSVNGKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPYK-SAYQDIVHCIQVLRYYAGWADKNMGQNIPVDGDFFSFTKHEPVGICGLIIPWNYPMLMMTWKMAPA 177          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 73/167 (43.71%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTL----HEPIGVAGQIIPWNFPLLMFAWK 707
            VK+ + QL INGQF+D+  GK++ T++P  G  I  V+  +  D++RAV+AA++AF+ G W +M   +R +++ R ADL+E H +E+A +E+ D+G  +  + +T V M+ + FRY+AGW DKIQG T P +     + L     EPIGV G +IPWN+PL+M AWK
Sbjct:  418 VKIPH-QLFINGQFMDAEGGKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGRTIPINQARPNRNLTFTRREPIGVCGIVIPWNYPLMMLAWK 583          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 84/174 (48.28%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  207 ITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            IT P  V Y Q   L I+G+FV  A GKTF T++P     I  V E   +DV+ AV+AARKAF EG W ++T   R +++ + ADL ER  + +A++E  DNGK     A  ++       RYY GWADKI G T   +      T HEPIGV GQIIPWNFPLLM+AWK+GPA
Sbjct:    8 ITTPNGVKYEQPLGLFIDGEFVKGAEGKTFETINPSNEKPIVAVHEATEKDVDTAVAAARKAF-EGSWRQVTPSTRGRMLTKLADLFERDAEILASIEALDNGKSITM-AHGDIAGAAGCLRYYGGWADKIHGQTIDTNSETLNYTRHEPIGVCGQIIPWNFPLLMWAWKIGPA 179          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 75/167 (44.91%), Postives = 108/167 (64.67%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP---ADGPYHVQ-TLHEPIGVAGQIIPWNFPLLMFAWK 707
            VK+ Y Q  INGQFVD+  G+T+ T++P  G  I  V+     DV+RAV+AA+ AF+ G W RM A +R +++ R ADL+E + +E+A +E  D+G  +  + +T + M+ + FRY+AGW DKIQG T P   A   Y++  T  EP+G    IIPWN+PL+M AWK
Sbjct:  439 VKIPY-QCFINGQFVDAEDGETYATVNPTDGTTICRVSHASLADVDRAVAAAKDAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIPINQARPNYNLTFTKKEPLGACAIIIPWNYPLMMLAWK 604          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.705e-36
Identity = 75/167 (44.91%), Postives = 106/167 (63.47%), Query Frame = 3
Query:  219 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTL----HEPIGVAGQIIPWNFPLLMFAWK 707
            VK+ Y Q  INGQF D+  GKT+ T++P  G  I  V+     DV++AV+AA+ AF+ G W RM A ER +++ R ADLLE + +E+A +E  D+G  +  + +T + M+ + FRY+AGW DKIQG T P +     + L     EP+GV   IIPWN+PL+M AWK
Sbjct:  439 VKMPY-QCFINGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWK 604          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 3
Query:  207 ITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYE-RSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            + P V     +LLING+FV + SGKTF  ++P    VI +VAE E  DV+ AV AAR AF+     RMT  + R  ++LR AD+LE+++ E+AALE+ DNGKP+E +   +V ++   FRY AG ADK+ G   P  G +      +PIGV GQIIPWNFPLLM A+K+ PA
Sbjct:   11 MAPKVTHIQEKLLINGKFVPAVSGKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFESF---RMTDCQWRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLADKVNGTVPPRSGNFLGIVKRQPIGVCGQIIPWNFPLLMAAFKLSPA 179          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 71/161 (44.10%), Postives = 107/161 (66.46%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNFPLLMFAWK 707
            QL I G+FVD+   KT+ T++P  G VI  V+  +  DV++AV+AA++AF+ G W ++ A +R +++ R ADL+E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G +IPWN+PL+M +WK
Sbjct:  423 QLFIGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWK 583          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 72/161 (44.72%), Postives = 107/161 (66.46%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNFPLLMFAWK 707
            QL I G+FVD+   KT+ T++P  G VI  V+  +  DV++AV+AA+ AF+ G W +++A +R +++ R ADL+E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G IIPWN+PL+M +WK
Sbjct:  423 QLFIGGEFVDAEGAKTYETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNYPLMMLSWK 583          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
AL1A3_RAT3.774e-3847.02Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
FTHFD_XENTR6.438e-3844.3110-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
CROM_ENTDO1.873e-3745.03Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
FTHFD_XENLA3.195e-3743.7110-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
ALDH_ASPNG9.296e-3748.28Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
AL1L2_MOUSE2.071e-3644.91Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
AL1L2_HUMAN2.705e-3644.91Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
ALDH2_LEITA3.532e-3648.26Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
FTHFD_MOUSE4.614e-3644.1010-formyltetrahydrofolate dehydrogenase OS=Mus mus... [more]
FTHFD_PONAB6.025e-3644.7210-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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