FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 70/161 (43.48%), Postives = 107/161 (66.46%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNFPLLMFAWK 707
            QL I G+FVD+   KT+ T++P  G VI  V+  +  DV++AV+AA++AF+ G W ++ A +R +++ R AD++E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G +IPWN+PL+M +WK
Sbjct:  423 QLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDRGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWK 583          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: FTHFD_HUMAN (10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens GN=ALDH1L1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNFPLLMFAWK 707
            QL I G+FVD+   KT  T++P  G VI  V+  +  DV++AV+AA+ AF+ G W +++A +R +++ R ADL+E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G IIPWN+PL+M +WK
Sbjct:  423 QLFIGGEFVDAEGAKTSETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNYPLMMLSWK 583          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: CROM_OMMSL (Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 73/175 (41.71%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  207 ITPPVK---VDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            I PP +   + + ++ IN QFV+S S K +P  +P   + +  V EG+  D+++AV A + AF  G PW RM A     ++ R ADL+ER    +A+LET D GKP++ S Q  V    ++ RY+AGWADK  G + P DG +   T +EP+GV G +IP+N+P+LM  WK+ PA
Sbjct:    4 IPPPTRNPEIKHNKIFINNQFVNSTSNKAYPVYNPCDNEKVCEVQEGDKSDIDKAVQACKAAFKRGTPWRRMDASRLGHLLYRLADLMERDIAYMASLETMDTGKPYKNSYQDMVHCI-QVLRYFAGWADKNMGESIPVDGDFFCYTRNEPVGVCGLLIPYNYPMLMMTWKMAPA 177          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 78/162 (48.15%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  234 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            T L IN +FV    GKTF  ++P    VIT V E   +DV+ AV+AARKAF EG W + T   R K++   A+L E++ D +AA+E+ DNGK     A+ ++ M     RYY GWADKI G               EPIGV GQIIPWNFPLLM+AWK+GPA
Sbjct:   18 TGLFINNEFVKGQEGKTFDVINPSDESVITQVHEATEKDVDIAVAAARKAF-EGSWRQETPENRGKLLNNLANLFEKNIDLLAAVESLDNGKAISM-AKGDISMCVGCLRYYGGWADKITGKVIDTTPDTFNYVKKEPIGVCGQIIPWNFPLLMWAWKIGPA 177          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH4_YEAST (Potassium-activated aldehyde dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=ALD4 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  204 PITPPVKV----DYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            P+T P+K+    +Y Q   L IN +FV S   KTF  ++P T + I H+ EG  +DV  AV AA +AF  G W  +   +R K + R A+L+E+  D IA++ET DNGK    S++ +V +     +  AG+ADKI G        +   T  +P+GV GQIIPWNFPLLM+AWK+ PA
Sbjct:   28 PMTVPIKLPNGLEYEQPTGLFINNKFVPSKQNKTFEVINPSTEEEICHIYEGREDDVEEAVQAADRAFSNGSWNGIDPIDRGKALYRLAELIEQDKDVIASIETLDNGKAI-SSSRGDVDLVINYLKSSAGFADKIDGRMIDTGRTHFSYTKRQPLGVCGQIIPWNFPLLMWAWKIAPA 205          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 78/175 (44.57%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  207 ITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFD-EGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            IT P    Y Q   L IN Q VDS  G       P T  +I  VA+ + EDV+ AV  AR AF  + PW + ++ +R + + R AD +E++ + +A++ET DNGK     A+ +V      FRYY GWADK  G T   D      T HEPIGV GQIIPWNFP LM AWK+ PA
Sbjct:   11 ITVPTGKTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITL-ARGDVQAAADCFRYYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPA 184          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: PUUC_ECOLI (Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=puuC PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 65/161 (40.37%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L ING++  +A  +TF T+DP T   +  +A G++ D++RA+SAAR  F+ G W   +  +R  ++ + ADL+E H +E+A LET D GKP   S + ++P   R  R+YA   DK+ G  A          + EP+GV   I+PWNFPLL+  WK+GPA
Sbjct:   21 RLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPA 181          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH5_YEAST (Aldehyde dehydrogenase 5, mitochondrial OS=Saccharomyces cerevisiae GN=ALD5 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.064e-32
Identity = 76/175 (43.43%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  204 PITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            PIT P    Y Q   L ING+FV S   KTF  ++P   + IT V +   +DV+ AV+AA+KAF E  W  +    R+K +   ADL+E+H + +AA+E+ DNGK     A+ +V + ++  R   GWADKI G        +   ++ EP+GV GQIIPWNFPLLM++WK+GPA
Sbjct:   31 PITLPNGFTYEQPTGLFINGEFVASKQKKTFDVINPSNEEKITTVYKAMEDDVDEAVAAAKKAF-ETKWSIVEPEVRAKALFNLADLVEKHQETLAAIESMDNGKSLF-CARGDVALVSKYLRSCGGWADKIYGNVIDTGKNHFTYSIKEPLGVCGQIIPWNFPLLMWSWKIGPA 203          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH5_YEAS7 (Aldehyde dehydrogenase 5, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=ALD5 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.064e-32
Identity = 76/175 (43.43%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  204 PITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            PIT P    Y Q   L ING+FV S   KTF  ++P   + IT V +   +DV+ AV+AA+KAF E  W  +    R+K +   ADL+E+H + +AA+E+ DNGK     A+ +V + ++  R   GWADKI G        +   ++ EP+GV GQIIPWNFPLLM++WK+GPA
Sbjct:   31 PITLPNGFTYEQPTGLFINGEFVASKQKKTFDVINPSNEEKITTVYKAMEDDVDEAVAAAKKAF-ETKWSIVEPEVRAKALFNLADLVEKHQETLAAIESMDNGKSLF-CARGDVALVSKYLRSCGGWADKIYGNVIDTGKNHFTYSIKEPLGVCGQIIPWNFPLLMWSWKIGPA 203          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH_AGABI (Aldehyde dehydrogenase OS=Agaricus bisporus GN=aldA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  234 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            T L ING+FVD     T   ++P  G +IT ++E    D++ AV AA KAF+       +  +R  ++ + A L+E++ D+++A+E  DNGK F  +   ++ ++    ++YAGWADK  G     D      + HEPIGV GQIIPWNFPLLM AWK+GPA
Sbjct:   22 TGLFINGEFVDGVKNTTIDVVNPANGKLITKISEATEADIDIAVEAAHKAFETTWGLNCSGSKRGDMLYKLAQLMEKNIDDLSAIEALDNGKTFLWAKSVDLSLSISTIKHYAGWADKNFGQVIETDEKKLTYSRHEPIGVVGQIIPWNFPLLMLAWKIGPA 183          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
FTHFD_RAT7.870e-3643.4810-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
FTHFD_HUMAN2.990e-3544.7210-formyltetrahydrofolate dehydrogenase OS=Homo sa... [more]
CROM_OMMSL5.101e-3541.71Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3[more]
ALDH_CLAHE3.306e-3448.15Aldehyde dehydrogenase OS=Cladosporium herbarum GN... [more]
ALDH4_YEAST7.366e-3442.46Potassium-activated aldehyde dehydrogenase, mitoch... [more]
YF19_SCHPO6.235e-3344.57Putative aldehyde dehydrogenase-like protein C9E9.... [more]
PUUC_ECOLI6.235e-3340.37Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen... [more]
ALDH5_YEAST1.064e-3243.43Aldehyde dehydrogenase 5, mitochondrial OS=Sacchar... [more]
ALDH5_YEAS71.064e-3243.43Aldehyde dehydrogenase 5, mitochondrial OS=Sacchar... [more]
ALDH_AGABI2.369e-3241.36Aldehyde dehydrogenase OS=Agaricus bisporus GN=ald... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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