FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURCM (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=betB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++AR+   E  W  MTA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++AR+   E  W  MTA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.279e-32
Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  DLL   NDE+AALET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.279e-32
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TGD++  V +  A DV+RA+++A++   E  W  MTA +RS+I+ R  +LL   NDE+AALET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGDLLAQVQQASAADVDRAIASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGLQVPLRADSFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.004e-32
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.004e-32
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.536e-31
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  +TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGAYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.620e-31
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  +LL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURCA (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.620e-31
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W  MTA +RS+I+ R  +LL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPA 166
[Close]
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: BETB_BURPP (Betaine aldehyde dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = 3 
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +L I G +VD+ SG+TF TLDP TG+ +  V +  A DV+RAV +A++   E  W  +TA +RS+I+ R  DLL   NDE+AALET D GKP  ++   ++     +  YYAG A  I+G   P      V T  EP+GV   I  WN+P+ +  WK  PA
Sbjct:    8 RLYIGGGYVDATSGETFDTLDPATGETLASVQQASAADVDRAVRSAKQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGQQIPLRPTSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPA 166
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
BETB_BURCM3.095e-3243.48Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURA43.095e-3243.48Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURS35.279e-3243.48Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURM15.279e-3242.86Betaine aldehyde dehydrogenase OS=Burkholderia mul... [more]
BETB_BURCJ9.004e-3242.86Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCC9.004e-3242.86Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURVG1.536e-3142.24Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_BURCH2.620e-3142.24Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCA2.620e-3142.24Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURPP3.783e-3042.24Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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